1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttgacatttgttgccctagaacagtgtcatagtatttacataatgtggatacgtcaatgcaggtatgtaacgatccccttggcttagtgatgcattaaatgctgaacttgatacataattttgtgccagctattaaatttcctgatggctgtgaggattgttctctgcagCTACGATGCGCTAATTCTTGTGGCGGGAGGAATCGGTGTCTCTCCCTTCGTGGCTATCCTTCGCGACTTACTTCATCGCTACCAAAGAGAACAATCCAAC
species | Physcomitrella patens |
transcript | PP1S39_125V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTGCTGTTGAAGGCCCTTATGGCCACGAATCGGACTACTTTCTTCA CTACGATGCGCTAATTCTTGTGGCGGGAGGAATCGGTGTCTCTCCCTTCGTEST: gi|162184331|gb|FC360533.1|FC360533
genomic: AAAGCTGCTGTTGAAGGCCCTTATGGCCACGAATCGGACTACTTTCTTCAgtaagttgac ... ttctctgcagCTACGATGCGCTAATTCTTGTGGCGGGAGGAATCGGTGTCTCTCCCTTCGT
EST: AAAGCTGCTGTTGAAGGCCCTTATGGCCACGAATCGGACTACTTTCTTCA CTACGATGCGCTAATTCTTGTGGCGGGAGGAATCGGTGTCTCTCCCTTCGT
genomic: AAAGCTGCTGTTGAAGGCCCTTATGGCCACGAATCGGACTACTTTCTTCAgtaagttgac ... ttctctgcagCTACGATGCGCTAATTCTTGTGGCGGGAGGAATCGGTGTCTCTCCCTTCGT
taattttgtgccagctattaaatttcctgatggctgtgaggattgttctctgcagCTACGATGCGCTAATTCTTGTGGCGGGAGGAATCGGTGTCTCTCCCTTCGTGGCTATCCTTCGCGACTTACTTCATCGCTACCAAAGAGAACAATCCAAC
tcctgat putative branch site (score: 22)
ttgttctct putative PPT
tattaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgacatttgttgccctagaacagtgtcatagtatttacataatgtggatacgtcaatgcaggtatgtaacgatccccttggcttagtgatgcattaaatgctgaacttgatacataattttgtgccagctattaaatttcctgatggctgtgaggattgttctctgcagCTACGATGCGCTAATTCTTGTGGCGGGAGGAATCGGTGTCTCTCCCTTCGTGGCTATCCTTCGCGACTTACTTCATCGCTACCAAAGAGAACAATCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA