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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAACCAAATTATAGGTCAAAAATTATCCATCGTGACAAACAAACCGCAGACAACTCGGCACCGCATCCTTGGGATTTGCTCCGGCCCTGATTATCAAgtacagataatttcctctgcaatttttcaatcatcaagccatctgcaattttttagcatatatatatatatatatatatacataatggcatgctggattt...

Basic information

species Physcomitrella patens
transcript PP1S399_34V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100406192|gb|BY991585.1|BY991585
EST:     AGACAACTCGGCACCGCATCCTTGGGATTTGCTCCGGCCCTGATTATCAA                         ATGGTATTGTATGATACTCCAGGAGTGATTTCGAAGCAGGTTAAGAAGTTA
genomic: AGACAACTCGGCACCGCATCCTTGGGATTTGCTCCGGCCCTGATTATCAAgtacagataa ... gttgttacagATGGTATTGTATGATACTCCAGGAGTGATTTCGAAGCAGGTTAAGAAGTTA
EST: gi|100401437|gb|BY991002.1|BY991002
EST:     AGACAACTCGGCACCGCATCCTTGGGATTTGCTCCGGCCCTGATTATCAN                         ATGGTATTGTATGATACTCCAGGAGTGATTTCGAAGCAGGTAAAGAAGTTA
genomic: AGACAACTCGGCACCGCATCCTTGGGATTTGCTCCGGCCCTGATTATCAAgtacagataa ... gttgttacagATGGTATTGTATGATACTCCAGGAGTGATTTCGAAGCAGGTTAAGAAGTTA
EST: gi|100436617|gb|BY961307.1|BY961307
EST:     GACNACTCGGCACCGCATCCTTGGGATTTGCTCCGGCCCCTGAT-ATCAA                         ATGGTATTGTATGATACTC
genomic: GACAACTCGGCACCGCATCCTTGGGATTTGCTCCGGCCC-TGATTATCAAgtacagataa ... gttgttacagATGGTATTGTATGATACTC