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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCGGAACGGAAACCCATGGCAGAAGAACCTAAGCCTTTCCTCTCTCTTGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTGgtaaccacttctcctcttccttagttctggcatcatttttccgatgctacgttctttattatctgtctgatacttgtttcttttaaaatagggtttggtt...

Basic information

species Physcomitrella patens
transcript PP1S399_34V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100399717|gb|BY972857.1|BY972857
EST:     AGGGACTACGACTTTTGAGA-TCTTATTGTGGATCCTAATCACCGTAGTG                         GTTACGTTGGCTCTTGTAGGAAAACCAAATGCTGGTAAAAAGTACACTTCC
genomic: AGG-ACTACGACTTT-GAGAATCTTATTGTGGATCCTAATCACCGTAGTGgtaaccactt ... gattacgcagGTTACGTTG-CTCTTGTAGGAAAACCAAATGCTGG-AAAAAGTACACTTC-
EST: gi|100406192|gb|BY991585.1|BY991585
EST:     TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTG                         GTTACGTTGCTCTTGTAGGGAAACCAAATGCTGGAAAAAGTACACTTCTGA
genomic: TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTGgtaaccactt ... gattacgcagGTTACGTTGCTCTTGTAGGAAAACCAAATGCTGGAAAAAGTACACTTCTGA
EST: gi|100401437|gb|BY991002.1|BY991002
EST:     TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTG                         GTTACGTTGCTCTTGTAGGANAACCAAATGCTGGAAAAAGTACACTTCTGA
genomic: TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTGgtaaccactt ... gattacgcagGTTACGTTGCTCTTGTAGGAAAACCAAATGCTGGAAAAAGTACACTTCTGA
EST: gi|100436617|gb|BY961307.1|BY961307
EST:     TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTG                         GTTACGTTGCTCTTGTAGGAAAACCAAATGCTGGAAAAAGTACACTTCTGA
genomic: TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTGgtaaccactt ... gattacgcagGTTACGTTGCTCTTGTAGGAAAACCAAATGCTGGAAAAAGTACACTTCTGA
EST: gi|100356660|gb|BY965216.1|BY965216
EST:     TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTG                         GTTACGTTGCTCTTGTAGGAAAACCAAATGCTGGAAAAAGTACACTTCTGA
genomic: TGAGGACTACGACTTTGAGAATCTTATTGTGGATCCTAATCACCGTAGTGgtaaccactt ... gattacgcagGTTACGTTGCTCTTGTAGGAAAACCAAATGCTGGAAAAAGTACACTTCTGA