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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttcagtgtgttgaatatcgtcgggattgatgggatggatgttcgagtcgaagattgctttcctgaccttgcagagtgtcgtaggtaccttgatatgaatctgatattttttccctgcttgatatctgcattgcag

Basic information

species Physcomitrella patens
transcript PP1S399_19V6.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344976|gb|BJ177017.1|BJ177017
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|208392400|gb|DC904246.1|DC904246
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|67573928|gb|BJ946752.1|BJ946752
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|18368205|gb|BJ200290.1|BJ200290
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|100392595|gb|BY971788.1|BY971788
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|100448742|gb|CJ973041.1|CJ973041
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|18348183|gb|BJ180230.1|BJ180230
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|208353920|gb|DC930088.1|DC930088
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGNCGTANACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
EST: gi|100369024|gb|BY984986.1|BY984986
EST:     TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAG                         CTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG
genomic: TTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttc ... tgcattgcagCTTGGCGTAGACACTGTGCCCGTGCTGATAGGTCCAGTGACTTATCTGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACTACATTGTGCCAGAGTTGAGCGGTGAGACAAAGTTTGTTTACTCTTCACGCAAGGCCGTGAGCGAGTACAAGGAGGCTAAGGAGgtgcgttttcagtgtgttgaatatcgtcgggattgatgggatggatgttcgagtcgaagattgctttcctgaccttgcagagtgtcgtaggtaccttgatatgaatctgatattttttccctgcttgatatctgcattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG