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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTTTCCTTTACAGTGGGATTCCTCTCCGCTATCGTTGACAGGGATCCTCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcgctctgattcctccgatagcggtgcattgtcgtgggtttggtggtttctccaggccgccgacaaggtttttcgtgtgggccggtggtgggt...

Basic information

species Physcomitrella patens
transcript PP1S399_19V6.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344976|gb|BJ177017.1|BJ177017
EST:     AGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: AGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18347252|gb|BJ179298.1|BJ179298
EST:     TCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18359592|gb|BJ191653.1|BJ191653
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18372727|gb|BJ204329.1|BJ204329
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|67704006|gb|BJ964239.1|BJ964239
EST:     TTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18373563|gb|BJ205141.1|BJ205141
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18369599|gb|BJ201687.1|BJ201687
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|208392400|gb|DC904246.1|DC904246
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18367651|gb|BJ199734.1|BJ199734
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|67573928|gb|BJ946752.1|BJ946752
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18328417|gb|BJ160422.1|BJ160422
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18346742|gb|BJ178787.1|BJ178787
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18361776|gb|BJ193843.1|BJ193843
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18366415|gb|BJ198494.1|BJ198494
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18326345|gb|BJ158344.1|BJ158344
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18373623|gb|BJ205201.1|BJ205201
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|100392595|gb|BY971788.1|BY971788
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18359493|gb|BJ191554.1|BJ191554
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18353384|gb|BJ185439.1|BJ185439
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18351680|gb|BJ183732.1|BJ183732
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAN                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18348183|gb|BJ180230.1|BJ180230
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18372722|gb|BJ204324.1|BJ204324
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|208353920|gb|DC930088.1|DC930088
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18370435|gb|BJ202037.1|BJ202037
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
EST: gi|18350058|gb|BJ182109.1|BJ182109
EST:     TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAG                         ATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC
genomic: TCTGAGCCCCAGTTGTTGCCGGATCTCGCTTCTACCTCTTTTTCCCTCAGgtgggtcgcg ... tctctcacagATTTCAAGAACCATGACTTCTCACGTGGTTGGATATCCCCGCATGGGCCCC