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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagctctctgaaattcaaaaaaaatgaaagttaattacgccatttctgtcatattacgtcaatctgacgatagtttcccccttcgtagGTGAATGCAGTGGGGATTGCTCCTTCACTTCCTCGCACTGCCTCTAACAAGGTGATGAGGCGGATGCTTCGCAGCCAATACGGACCAGTCACTTGTCCAA

Basic information

species Physcomitrella patens
transcript PP1S398_24V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162261414|gb|FC438250.1|FC438250
EST:     AGAAGGTTTTCAATGCAGCAATTCAAGCAAAGCTGAATCCTTTGTTTAAG                         GTGAATGCAGTGGGGATTGCTCCTTCACTTCCTCGCACTGCCTCTAACAAG
genomic: AGAAGGTTTTCAATGCAGCAATTCAAGCAAAGCTGAATCCTTTGTTTAAGgtagctctct ... cccttcgtagGTGAATGCAGTGGGGATTGCTCCTTCACTTCCTCGCACTGCCTCTAACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attacgccatttctgtcatattacgtcaatctgacgatagtttcccccttcgtagGTGAATGCAGTGGGGATTGCTCCTTCACTTCCTCGCACTGCCTCTAACAAGGTGATGAGGCGGATGCTTCGCAGCCAATACGGACCAGTCACTTGTCCAA
                            atctgac  putative branch site (score: 3)
                                        tttcccccttcgt  putative PPT
               tcatatta  TA-rich tract