1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGTCACAGGATCAATGTTACAGCCTCAAACTTTGTCAGCGTTTAGCACGCCTGCTATGGGTTGCAAGATTGTAATACTTGATGATCGTGGGCAACCTCTGgttagtgctgaaattgttcgtgttatggtcataacattttgaacgagcaactgagtgtattatagacgtcacacgatttagaactgttaccttttgtaaa...
species | Physcomitrella patens |
transcript | PP1S398_24V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGCTATGGG-TGCAAAGATTGTAATACTTGATGATCGTGGGCAACCTCTG CCATCAGATCTACCAGCCACTGGAGAGTGTGCATTGGACCCATCGATCTTTEST: gi|162247101|gb|FC422275.1|FC422275
genomic: TGCTATGGGTTGC-AAGATTGTAATACTTGATGATCGTGGGCAACCTCTGgttagtgctg ... tttggtccagCCATCAGATCTACCAGCCACTGGAGAGTGTGCATTGGACCCATCGATCTTT
EST: CTGCTATGGGTTGCAAGATTGTAATACTTGATGATCGTGGGCAACCTCTG CCATCAGATCTACCAGCCACTGGAGAGTGTGCATTGGACCCATCGATCTTTEST: gi|162165642|gb|FC341481.1|FC341481
genomic: CTGCTATGGGTTGCAAGATTGTAATACTTGATGATCGTGGGCAACCTCTGgttagtgctg ... tttggtccagCCATCAGATCTACCAGCCACTGGAGAGTGTGCATTGGACCCATCGATCTTT
EST: CTGCTATGGGTTGCAAGATTGTAATACTTGATGATCGTGGGCAACCTCTG CCATCAGATCTACCAGCCACTGGAGAGTGTGCATTGGACCCATCGATCTTT
genomic: CTGCTATGGGTTGCAAGATTGTAATACTTGATGATCGTGGGCAACCTCTGgttagtgctg ... tttggtccagCCATCAGATCTACCAGCCACTGGAGAGTGTGCATTGGACCCATCGATCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCACAGGATCAATGTTACAGCCTCAAACTTTGTCAGCGTTTAGCACGCCTGCTATGGGTTGCAAGATTGTAATACTTGATGATCGTGGGCAACCTCTGgttagtgctgaaattgttcgtgttatggtcataacattttgaacgagcaactgagtgtattatagacgtcacacgatttagaactgttaccttttgtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA