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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcatctctagagagcaattccggccactcggggtattatgcacagagtaagccggcacccaagaagcagcctttcagaccagtctaaagctgtcgccaaattgctactgacaagcatgtttgtttctggaaaatctctcaaacagATCGGGAGTTTCAAGCACTGGAAACGAGGTAATTGAGCTTAAAAATCAAGCTTCTCAATCAGGATTTCTCAGTCCTTGTTGAATTACATCCACAGTACCG

Basic information

species Physcomitrella patens
transcript PP1S398_10V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37823768|gb|BJ581834.1|BJ581834
EST:     AGCGAGAGCGGCAGGACGAGTCCGCTTCGGAGCTCCAGCCGGCTGCTCAG                         ATCGGGAGTTTCAAGCACTGGAAACGAGGTAATTGAGCTTAAAAATCAAGC
genomic: AGCGAGAGCGGCAGGACGAGTCCGCTTCGGAGCTCCAGCCGGCTGCTCAGgtgcgcatct ... tctcaaacagATCGGGAGTTTCAAGCACTGGAAACGAGGTAATTGAGCTTAAAAATCAAGC
EST: gi|37825603|gb|BJ583669.1|BJ583669
EST:     AGCGAGAGCGGCAGGACGAGTCCGCTTCGGAGCTCCAGCCGGCTGCTCAG                         ATCGGGAGTTTCAAGCACTGGAAACGAGGTAATTGAGCTTAAAAATCAAGC
genomic: AGCGAGAGCGGCAGGACGAGTCCGCTTCGGAGCTCCAGCCGGCTGCTCAGgtgcgcatct ... tctcaaacagATCGGGAGTTTCAAGCACTGGAAACGAGGTAATTGAGCTTAAAAATCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcgccaaattgctactgacaagcatgtttgtttctggaaaatctctcaaacagATCGGGAGTTTCAAGCACTGGAAACGAGGTAATTGAGCTTAAAAATCAAGCTTCTCAATCAGGATTTCTCAGTCCTTGTTGAATTACATCCACAGTACCG
              tactgac  putative branch site (score: 1)
                                           tctctc  putative PPT
                            tttgttt  TA-rich tract