1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
GGGCTTCAAGGAGGCTAGTTCACGATCTTCAAAATCTGTTTACAATGGGCACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAGgtacccattaattttgagatcggttaatggatgactttgaagcgtcaacggctctctttcatacatttatttatttttgatactggcgtttcatgagggcaagcatgttggtgagcatgtggagttaaacacttacctgttgtctgagcag
species | Physcomitrella patens |
transcript | PP1S396_8V6.1 |
intron # | 24 |
splice site | 5' |
intron type | U2 |
EST: ACGATGAAGAAGTTGACACTGCAAACGGCAATAGGTCTCCTATGGACAAG GTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGAEST: gi|162185897|gb|FC360997.1|FC360997
genomic: ACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAGgtacccatta ... gtctgagcagGTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGA
EST: ACGATGAAGAAGTTGACACTGCAAACGGCAATAGGTCTCCTATGGACAAG GTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGAEST: gi|162177303|gb|FC353460.1|FC353460
genomic: ACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAGgtacccatta ... gtctgagcagGTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGA
EST: ACGATGAAGAAGTTGACACTGCAAACGGCAATAGGTCTCCTATGGACAAG GTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGAEST: gi|18339093|gb|BJ171119.1|BJ171119
genomic: ACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAGgtacccatta ... gtctgagcagGTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGA
EST: ACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAG GTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGAEST: gi|37836632|gb|BJ594640.1|BJ594640
genomic: ACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAGgtacccatta ... gtctgagcagGTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGA
EST: ACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAG GTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGA
genomic: ACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAGgtacccatta ... gtctgagcagGTCCGGGCACAGATAGACGATGCAGTAGCTGGAGAGTGCCCTTTCTGCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTTCAAGGAGGCTAGTTCACGATCTTCAAAATCTGTTTACAATGGGCACGATGAAGAAGTTGACACTGCAAACGGCAATATGTCTCCTATGGACAAGgtacccattaattttgagatcggttaatggatgactttgaagcgtcaacggctctctttcatacatttatttatttttgatactggcgtttcatgagggcaagcatgttggtgagcatgtggagttaaacacttacctgttgtctgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT