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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcaactttacgacctgccattttcattccttaattgtttatccttttttaaattaaaatccatataacccactattgtgtttatttgggttgattacagATTAACAGACTGCTTCTAGACGTTGATGATGAAAAGGAAGTCGATGAAAATGAAGGTAGCATTGGAAATTCAGAATATCACAGTACAGTGCGGGAGTTTC

Basic information

species Physcomitrella patens
transcript PP1S396_8V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162177304|gb|FC353461.1|FC353461
EST:     CACAAATTACTATGATTGCCACCTGGGCTGCTGAACTTTACTTAGATAAG                         ATTAACAGACTGCTTCTAGACGTTGATGATGAAAAGGAAGTCGATGAAAAT
genomic: CACAAATTACTATGATTGCCACCTGGGCTGCTGAACTTTACTTAGATAAGgtacacatat ... ttgattacagATTAACAGACTGCTTCTAGACGTTGATGATGAAAAGGAAGTCGATGAAAAT
EST: gi|162179347|gb|FC356296.1|FC356296
EST:     CACAAATTACTATGATTGCCACCTGGGCTGCTGAACTTTACTTAGATAAG                         ATTAACAGACTGCTTCTAGACGTTGATGATGAAAAGGAAGTCGATGAAAAT
genomic: CACAAATTACTATGATTGCCACCTGGGCTGCTGAACTTTACTTAGATAAGgtacacatat ... ttgattacagATTAACAGACTGCTTCTAGACGTTGATGATGAAAAGGAAGTCGATGAAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttaaattaaaatccatataacccactattgtgtttatttgggttgattacagATTAACAGACTGCTTCTAGACGTTGATGATGAAAAGGAAGTCGATGAAAATGAAGGTAGCATTGGAAATTCAGAATATCACAGTACAGTGCGGGAGTTTC
     aaattaaaatccatat  TA-rich tract