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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggcaatgaaatattgagtgaaataacttccaagaggtggctcttatggtcattattacttctatcttgttcatcctatagctaatgtttgttgtgtagATGCGGTTCAATCTTCGCAAGTCCTTTCCACTACTCACGACTAAG

Basic information

species Physcomitrella patens
transcript PP1S34_360V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162204721|gb|FC381429.1|FC381429
EST:     AAGGAGACCGCACCGGCACGGGTACCATTTCTAAATTTGGTTGCCAG                         ATGCGGTTCAATCTTCGCAAGTCCTTTCCACTACTCACGACTAAG
genomic: AAGGAGACCGCACCGGCACGGGTACCATTTCTAAATTTGGTTGCCAGgtactgactt ... tgttgtgtagATGCGGTTCAATCTTCGCAAGTCCTTTCCACTACTCACGACTAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggtcattattacttctatcttgttcatcctatagctaatgtttgttgtgtagATGCGGTTCAATCTTCGCAAGTCCTTTCCACTACTCACGACTAAG
                                   agctaat  putative branch site (score: 3)
       attattacttctat  TA-rich tract