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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTCGATGGAGGGATGGTACAACCAGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCTGgtgagactctctccccccccttgtcctaatctgtagttgccattcctgttttggcggttgggagcgactgttttacttttgagctatattttgggtttgtgtaattttcgtacatgcag

Basic information

species Physcomitrella patens
transcript PP1S208_44V6.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 6
lower sequence: GLYMA08G21570.1 (Glycine max), 5'ss of exon 8
CTACTCGATGGAGGGATGGTACAACCAGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCTGgtgagactctctccccccccttgtcctaatctgtagttgccattcctgttttggcggttgggagcgactgttttacttttgagctatattttgggtttgtgtaattttcgtacatgcag
|||||   ||||||||| |||||||  |   |||||| ||||||||||||||||||||||| ||| |||     |   |     |   |    ||     | ||||  |   || |||  || |||         ||| ||  | || | || |||      | | |  |                
CTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAGgtatttataattgaaatcggattatgtagaaaat-gttgatacaactatttatgcagtttt------ttgtattgatattaacctgtatggaaaatattttcag---------------