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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgagctcgtaccattgtgatttcactcttgagatgtgattactagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcggattctttctccag

Basic information

species Physcomitrella patens
transcript PP1S208_44V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 3
GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgagctcgtaccattgtgatttcactcttgagatgtgattactagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcggattctttctccag
              | | | ||| || || ||||| |   | || || || ||  ||||| ||||||| |||||||||||||||||||  ||  ||   | || || |  |  |||||||          | || |||       |||| | ||       |  |   || |||  | ||| ||  |||| | ||   ||  |   |||    |     |  | |            
------------GTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCTCCTTATGAGTGGCAAGTTTACAAgtaagtgacggatttgt-ccttccttttttcact----------ggtttctacaa--aaaatttctttggccttgtcatctattgcatgttccaactggaattacgtctgaactttttggccttgtcgtccatcctgcag-----------

upper sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 3
GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgagctcgtaccattgtgatttcactcttgagatgtgattactagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcggattctttctccag
         ||   ||  ||    || |||||| |||   | || ||||||||| |||| |||||||||||||||||||| |||||||  ||     | |  |           |  | | |||  |  || || | |     | | || |||    |  ||| || ||||  |   | ||| |                                                     
---------TGGCATTGAAA----TTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAAGtaggtgctttgtttatgttgcaagagatata-tgttgtcaattgctttcgataagtgaatttgcct----gagttttttgttttgttttgtgaaaagc----------------------------------------------------

upper sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA20G38770.1 (Glycine max), 5'ss of exon 3
GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcg-----tctcgagctcgtaccattgtgatttcactcttgagatgtgatta-ctagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcggattctttctccag
          |  | ||  |  | || || ||| |||   |||| ||||||||  |||| |||||||||||||||||||| |||||||  |     |||   | |  |   ||| | | |    | || | ||    ||| || |  | |  || |  | |  | ||  || |  || | | || |  |    | |                                               
----------GTGGCTCTGA--AATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggcactttcttacgtttatgttatttt-actaattttttaaaataaatttatcttgatttgtgatcaagtat--gtatagctaaagtttaacttttatgttatgtcaaaag-------------------------------------------

upper sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G44050.1 (Glycine max), 5'ss of exon 3
GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtg-----cgtctcgagctcgtaccattgtgatttcactcttgagatgtgattactagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggcttgtctcctaaacctccatggttgacgcggattctttctccag
          |  | ||  |  | || || ||| | |   |||| ||||||||  |||| |||||||||||||||||||| |||||||      | |||   | |  ||  | | | || |   | || |  | | || | | |||   ||| ||  | |    |    ||   ||     ||   |||| |  ||                                              
----------GTGGCTCTGA--AATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAAgtaggtaccttcttacgtttatattaatat-atatttttttttaattatcatgatttgtgat-caagtatgtatagctaaagtttgacttttatgtt---atgtcaaaag----------------------------------------------

upper sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA08G47680.2 (Glycine max), 5'ss of exon 3
GTTGCGGGTTGAAGTTCGAACAAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgagctcgtaccatt-gtgatttcactcttgagatgtgattactagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggctt-gtctcctaaacctccatggttgacgcggattctttctccag
          |  | |   |  | || |||||  |||   | || ||||||||  |||| |||||||||||||||||||| |||||||  ||     | |  |       | ||| |   ||      ||   |   |  ||    |  |   | | |   |    |    | |   ||   || |  |||  | || || |  | ||                               
----------GTGGCTTTGA--AATTTGAGCACAGGAACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAAgtaggtgctttgtttatgttgcaagagatatgtgtcgacgattgctttcggttatgcacaagatttgtgtttaagtgaaattgcctgagtttttttatttatttaatgttttgttttgtgaaaag----------------------------

upper sequence: PP1S208_44V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA08G47680.3 (Glycine max), 5'ss of exon 1
------------GTTGCGGGTTGAAGTTCGAAC--AAGTTCGAGCATCGGAGTGGTAACGGCTGTAATCATGGTCCTCCTTACGAGTGGCAAGTTTACAAgtgcgtctcgagctcgtaccatt-gtgatttcactcttgagatgtgattactagtgtcgcaattacctttctgcatttcttattttcatcattcaaatgtgattagggctt-gtctcctaaacctccatggttgacgcggattctttctccag
             || || |||  || | |     || || |||||  |||   | || ||||||||  |||| |||||||||||||||||||| |||||||  ||     | |  |       | ||| |   ||      ||   |   |  ||    |  |   | | |   |    |    | |   ||   || |  |||  | || || |  | ||                               
CATTGACTGATTCTTTCGTGTTTCAGGTGGCTTTGAAATTTGAGCACAGGAACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAAgtaggtgctttgtttatgttgcaagagatatgtgtcgacgattgctttcggttatgcacaagatttgtgtttaagtgaaattgcctgagtttttttatttatttaatgttttgttttgtgaaaag----------------------------