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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgattaggggattccgatgtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag

Basic information

species Physcomitrella patens
transcript PP1S207_94V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os12g41400.1 (Oryza sativa), 5'ss of exon 2
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgattaggggattccgatgtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgta-gtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag
   || || ||||||||||||||  | || ||||| |||||||| | ||| || ||| | || |||||||||||||| || ||||| || |||||||| ||||     ||   | | |||  | |||    ||| |||       ||   | || | ||  |   |  || | |  |     ||   || | |  |||       | |                                           
CGCCGAGGATTGATGGAGCAGGACTTAAGCAAGCTTGACGTGACAAAGCTCCACCCGTTATCGCCTGAAGTTATCTCACGCCAGGCGACGATCAATATAGgta-----ttgatgcaatccttt-tag----cgatgttttactgttctacgagtat-tgcatagcttgtcactgcagttttttttctgtgtttcctgtctacaaagtgaat----------------------------------------

upper sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: LOC_Os12g07740.1 (Oryza sativa), 5'ss of exon 2
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgattaggggattc--cgatg--tagggtt-cgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag
   || ||  ||||| |||||||  | || ||||| |||||||||| ||| || ||  | ||||||||||||||||| || ||||| || |||||||| ||||       |     ||   | |||  ||  |||    ||||  || |  | |  | | |   ||  ||| ||      | |    || |  | |  |                                                        
GGCCGAGGACTGATGAAGCAGGACTTAAGCAAGCTTGACGTGACGAAGCTCCACCCTTTATCACCTGAAGTTATCTCACGCCAGGCGACGATCAATATCGgtattgatgcaacccttttagcaatgcttactgttatatggttaagtattacagaacttatcgctgcattt-tttattttgtgtgttttcttatgtacaaa------------------------------------------------------

upper sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G107654_T01 (Zea mays), 5'ss of exon 2
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgattaggggattccgatgtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag
   || || |||||||| |||||  | || || ||||| ||||||| ||| || || |||||||||||||||||||| || || || || |||||||| |||| |  ||        | |  ||| || |  |  |||   ||  |  |||   |  |   || |   |||    |   || || |   | ||    |   |                                                
CGTCGTGGATTGATGGAACAGGACTTAAGCAAACTGGATGTGACGAAGCTTCACCCCCTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATGGgtatg-aatgcaatcccttcactgt-ggttgtgccgttctctgatttggtgtcagcatacctgatatatcgtttggtttagtttctttgaagtttccttacg------------------------------------------------

upper sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GRMZM2G117900_T02 (Zea mays), 5'ss of exon 2
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgt----aagcgattaggggattccgat-gtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag
   || || |||||||| |||||  | || ||  |||| ||||| | |||  | || |||||||||||||||||||| || || || || ||||||||||||    | || ||  |   |    | | ||| |||||  || |  |  |||| |  |   ||  | | ||  ||      |      ||    | | |  ||                                                     
CGCCGTGGATTGATGGAACAGGACTTAAGCAAATTGGATGTGACAAAGCTTGACCCACTGTCACCTGAAGTTATCTCACGCCAAGCAACAATCAATATTGgtatggatgcaatctgtttaccatggttgtatggttctcggatttg-atgtcagcacacctg-atctattgatttattttgtttcttttaagttttcttatg-----------------------------------------------------

upper sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv10s0042g01220.t01 (Vitis vinifera), 5'ss of exon 1
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagc-gattaggggat----------tccgatgtagggttcgaggttgggtgtgtcc---gtgcgtgtgtgtgtgtttgttc-gccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag
    | |||||||||||||||||| | || |||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || ||||| |||||   | ||| || ||           |  |  |  | || |   |    | |         |  | | |   |   |||   |  || ||     ||||     || | |  | |  | || |    |  ||| |   |||| |  | |  |    |     
CGAAGAGGGTTGATGGAGCAGGATTTGAGCAAGCTGGATGTGACAACACTACATCCGCTCTCACCTGAAGTTATTTCTCGTCAGGCTACTATAAATATCGgtaattagcttatggaatgcttgaactaccttaccttagattagtcatcatatttactgcagaaggctttataaatccctgtctaggtgatggtcagctgtaaatcctaatcttttatatcagttgaagttgataatttcagttgattttatcttttcag-----

upper sequence: PP1S207_94V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv13s0074g00310.t01 (Vitis vinifera), 5'ss of exon 2
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgattaggggattccgatgtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgtt----gttgatg-ttgtggtggaatag----------
    | |||||||||||||||||| | || |||||||| ||||| || ||||||||||| || || |||||||| ||||||||||| || || |||||||||||     | |  || | || || |       |     | |  |||    |   |   |   ||  ||    ||   |   ||  | ||| ||| || |||  |  |  ||||||  |||   ||| |    | | ||  ||  ||| || |            
CGAAGAGGGTTGATGGAGCAGGATTTGAGCAAGCTGGATGTGACAACACTACATCCGCTCTCGCCCGAAGTTATTTCTCGTCAGGCTACTATAAATATTGgtaattagcttgcagaatgcg-tgaactaccttaacacagattagtcatcactcat-catac-ttactttaaggatatatatttccaatatctag-gtggtggtg-agctggcaatcctaatctttgattgaagctcataatttcggttgattttatcttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100363156|gb|BY984385.1|BY984385
EST:     ACATCCGCTGTCACCTGAAGTTATCACTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18367900|gb|BJ199983.1|BJ199983
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18358005|gb|BJ190064.1|BJ190064
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|208390337|gb|DC929285.1|DC929285
EST:     ACATCCGCTGTCANCTGAAGTTATCTCTCGTCAGGCCACCATNAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|67702207|gb|BJ962440.1|BJ962440
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCTACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|100364249|gb|BY984518.1|BY984518
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|162195753|gb|FC371144.1|FC371144
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|208367353|gb|DC939869.1|DC939869
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18328485|gb|BJ160490.1|BJ160490
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|100361446|gb|BY984092.1|BY984092
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18360577|gb|BJ192640.1|BJ192640
EST:     ACACCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|100421143|gb|BY976096.1|BY976096
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18330481|gb|BJ162487.1|BJ162487
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18346238|gb|BJ178281.1|BJ178281
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18358858|gb|BJ190917.1|BJ190917
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18326535|gb|BJ158534.1|BJ158534
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18364125|gb|BJ196198.1|BJ196198
EST:     ACACCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18350306|gb|BJ182357.1|BJ182357
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|67571651|gb|BJ944475.1|BJ944475
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|67717529|gb|BJ967788.1|BJ967788
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18357875|gb|BJ189934.1|BJ189934
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|67702081|gb|BJ962314.1|BJ962314
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCTACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|208391361|gb|DC941811.1|DC941811
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|162262330|gb|FC437657.1|FC437657
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|18361296|gb|BJ193362.1|BJ193362
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|67703591|gb|BJ963824.1|BJ963824
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|100448476|gb|CJ972775.1|CJ972775
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
EST: gi|100365464|gb|BY966609.1|BY966609
EST:     ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTG                         GTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT
genomic: ACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 34

AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgatt ... ggtggaatagGTACAATTGGCCATGTGGCTCACGGGAAGTCGACAGTAGTGAAGGCCATATCTGGTGTGCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCGGGGGTTGATGGAGCAGGATCTTAGTAAGCTGGACGTGACGACGCTACATCCGCTGTCACCTGAAGTTATCTCTCGTCAGGCCACCATCAATATTGgtaagcgattaggggattccgatgtagggttcgaggttgggtgtgtccgtgcgtgtgtgtgtgtttgttcgccgagggaagcttgtagtatgtagtgtagtgtggcggtcggcaattttaagtgttgttgttgatgttgtggtggaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG