1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATGAACATGGAACAACAGCTGCTAAAGCGGGTACAGGGTTGACTGTTGCAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTTgtgagttcttttttattttttatttgtctttatatttttaaatcaatatatacacacatacacatgaatgatgatttgtgcgttagttttctgaaaatca...
species | Physcomitrella patens |
transcript | PP1S207_2V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTT GCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTCEST: gi|162259083|gb|FC436403.1|FC436403
genomic: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTTgtgagttctt ... cgtaatgcagGCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTC
EST: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTT GCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTCEST: gi|100424210|gb|BY958370.1|BY958370
genomic: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTTgtgagttctt ... cgtaatgcagGCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTC
EST: CAGTCAAGCAATTTAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTT GCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTCEST: gi|100444240|gb|BY982269.1|BY982269
genomic: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTTgtgagttctt ... cgtaatgcagGCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTC
EST: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTT GCTGAAAGTTA-TTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTEST: gi|162196860|gb|FC374734.1|FC374734
genomic: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTTgtgagttctt ... cgtaatgcagGCTGAA-GTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCT
EST: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTT GCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTC
genomic: CAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTTgtgagttctt ... cgtaatgcagGCTGAAGTTAATTTTCTTGGTCAGCTTCACCATCCGAATCTCGTGAAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGAACATGGAACAACAGCTGCTAAAGCGGGTACAGGGTTGACTGTTGCAGTCAAGCAATTAAATCAAGAGGGTCTACAAGGTCACAGAGAGTGGCTTgtgagttcttttttattttttatttgtctttatatttttaaatcaatatatacacacatacacatgaatgatgatttgtgcgttagttttctgaaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG