1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgaagtcgtaaccagcatacccctttcgttttctcccaagatttgtagatgataattaacgagctatcttcttattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
species | Physcomitrella patens |
transcript | PP1S207_28V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162249698|gb|FC426526.1|FC426526
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37827125|gb|BJ585137.1|BJ585137
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162175834|gb|FC352136.1|FC352136
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|18340498|gb|BJ172526.1|BJ172526
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|7287402|gb|AW599889.1|AW599889
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162217120|gb|FC392484.1|FC392484
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|15261208|gb|BI436518.1|BI436518
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: AGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162191630|gb|FC367675.1|FC367675
genomic: AGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162191631|gb|FC367676.1|FC367676
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37840412|gb|BJ598420.1|BJ598420
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37826709|gb|BJ584721.1|BJ584721
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37827937|gb|BJ585949.1|BJ585949
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37828408|gb|BJ586420.1|BJ586420
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|208374509|gb|DC944979.1|DC944979
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37839229|gb|BJ597237.1|BJ597237
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|208352669|gb|DC921403.1|DC921403
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37851612|gb|BJ609620.1|BJ609620
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|7583861|gb|AW699764.1|AW699764
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|67720060|gb|BJ970319.1|BJ970319
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162217121|gb|FC392485.1|FC392485
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37837900|gb|BJ595908.1|BJ595908
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162263697|gb|FC439622.1|FC439622
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|7286362|gb|AW598903.1|AW598903
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37848687|gb|BJ606695.1|BJ606695
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGNCGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|208353452|gb|DC946316.1|DC946316
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|67697251|gb|BJ957484.1|BJ957484
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|208378223|gb|DC918844.1|DC918844
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37845126|gb|BJ603134.1|BJ603134
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37826854|gb|BJ584866.1|BJ584866
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|162272680|gb|FC448306.1|FC448306
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|208365594|gb|DC944092.1|DC944092
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37831279|gb|BJ589291.1|BJ589291
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37845996|gb|BJ604004.1|BJ604004
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAGEST: gi|37824831|gb|BJ582897.1|BJ582897
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
EST: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAG GTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
genomic: CAGCTGGTGCTATACACACAGATTTTGAAAGGGGTTTCATCTGTGCAGAGgtacgaagtc ... tattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
gttttctcccaagatttgtagatgataattaacgagctatcttcttattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
aattaac putative branch site (score: 40)
ctatcttcttatttt putative PPT
tatcttcttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaagtcgtaaccagcatacccctttcgttttctcccaagatttgtagatgataattaacgagctatcttcttattttacagGTCATGAAGTTTGACGACTTGAAGGAGCTCGGAAGTGAGTCAGCGGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT