Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaattgataaagttattaacccgattttaattttctctttgcatttcgtctttgtttcgtatcttgttttcatcattacattgcgtgattgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAACTTGCCATCCCTGCGATGAATTTTCCTTTCTGTACAATTGAGCCCAATG

Basic information

species Physcomitrella patens
transcript PP1S207_28V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18361521|gb|BJ193587.1|BJ193587
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|162272681|gb|FC448307.1|FC448307
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208383342|gb|DC907517.1|DC907517
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|67573864|gb|BJ946688.1|BJ946688
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18363393|gb|BJ195465.1|BJ195465
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|100415938|gb|BY956998.1|BY956998
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208370398|gb|DC931810.1|DC931810
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|67701573|gb|BJ961806.1|BJ961806
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208394358|gb|DC904178.1|DC904178
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|100451884|gb|CJ974990.1|CJ974990
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|100395348|gb|BY953692.1|BY953692
EST:     CCGAACGCCCCAACCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|162263698|gb|FC439623.1|FC439623
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18358448|gb|BJ190507.1|BJ190507
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|162202372|gb|FC379991.1|FC379991
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|100387386|gb|BY988257.1|BY988257
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208399872|gb|DC904954.1|DC904954
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|162264593|gb|FC440889.1|FC440889
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18361750|gb|BJ193817.1|BJ193817
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18347703|gb|BJ179750.1|BJ179750
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208397168|gb|DC911777.1|DC911777
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|100352204|gb|BY983091.1|BY983091
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208391589|gb|DC933838.1|DC933838
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|162278437|gb|FC454523.1|FC454523
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18351948|gb|BJ184000.1|BJ184000
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18363198|gb|BJ195270.1|BJ195270
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18347772|gb|BJ179819.1|BJ179819
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208393061|gb|DC929556.1|DC929556
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18345717|gb|BJ177760.1|BJ177760
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|162175835|gb|FC352137.1|FC352137
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18371439|gb|BJ203041.1|BJ203041
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18347497|gb|BJ179543.1|BJ179543
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|208359117|gb|DC930449.1|DC930449
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|18349457|gb|BJ181506.1|BJ181506
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA
EST: gi|100386335|gb|BY988002.1|BY988002
EST:     CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATT                         GTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACAAAA
genomic: CCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 12 (downstream exon)
Score: 5

CTAGCTTGAAGCCATGCCGCCCAAGGCTGCTAAGGGCAAGGAGGCTCCGGCCGAACGCCCCATCCTTGGTCGCTTCTCCTCCCACTTGAAGATTGGTATTgtaggtcctc ... tgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAACTTGCCATCCCTGCGATGAATTTTCCTTTCTGTACAATTGAGCCCAATG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgtctttgtttcgtatcttgttttcatcattacattgcgtgattgatttgcagGTTGGACTCCCCAATGTTGGAAAATCCACTTTGTTCAACACTCTCACGAAACTTGCCATCCCTGCGATGAATTTTCCTTTCTGTACAATTGAGCCCAATG
                                          gattgat  putative branch site (score: 5)
                              attacatt  TA-rich tract