1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagttaaccaccttttaattatattggattcgaaaatgactcagtgcacgaatgcgtctggattcttcatgtcggaagtctcgaaatattttttactttgaaagtggaagatatctgtgtaacttcatgtgtgtggattatttgatgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGCGATCATCCCTTTCAGAAAATGCCATTCTTTACATGGATTTGGCGGAAG
species | Physcomitrella patens |
transcript | PP1S207_12V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|67578747|gb|BJ950914.1|BJ950914
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACNGATGAGGAGEST: gi|208349491|gb|DC905629.1|DC905629
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|67697542|gb|BJ957775.1|BJ957775
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|37834717|gb|BJ592729.1|BJ592729
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|37840237|gb|BJ598245.1|BJ598245
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|208381510|gb|DC919512.1|DC919512
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|37850643|gb|BJ608651.1|BJ608651
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|67574145|gb|BJ946969.1|BJ946969
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|162233652|gb|FC409411.1|FC409411
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGEST: gi|37829200|gb|BJ587212.1|BJ587212
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
EST: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAG ATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
genomic: TGGCGGCTGGTTCCGTAGTCACACAAAGGACTCGCGTTCCTTCTGGCCAGgtcagttaac ... atgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAG
gaaagtggaagatatctgtgtaacttcatgtgtgtggattatttgatgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGCGATCATCCCTTTCAGAAAATGCCATTCTTTACATGGATTTGGCGGAAG
attatttgatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttaaccaccttttaattatattggattcgaaaatgactcagtgcacgaatgcgtctggattcttcatgtcggaagtctcgaaatattttttactttgaaagtggaagatatctgtgtaacttcatgtgtgtggattatttgatgattatagATATGGGCAGGAAGTCCTGCTAAGTTTTTGAGGGAGCTCACGGATGAGGAGCGATCATCCCTTTCAGAAAATGCCATTCTTTACATGGATTTGGCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA