1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGAGTGGTCTTCTCTCTGGGCAAGGCTGCGCGCACCACCGGCCAAGCTCTAGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagattcccatggctaggtctctggattggattcgagatcttggattgcaggtgcggcattgatcgggtgggagtcggtggtggtaattagggaat...
species | Physcomitrella patens |
transcript | PP1S207_12V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|18363020|gb|BJ195092.1|BJ195092
genomic: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|208349491|gb|DC905629.1|DC905629
genomic: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|67697542|gb|BJ957775.1|BJ957775
genomic: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: CAAAGATGAGG TTTCCAAGCATCAAACCG-TTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|18353257|gb|BJ185312.1|BJ185312
genomic: CAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|18350228|gb|BJ182279.1|BJ182279
genomic: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|208381510|gb|DC919512.1|DC919512
genomic: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: CGTCTCNGTTCACGC-TGCAAGGCGGCAACACGNTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|37850643|gb|BJ608651.1|BJ608651
genomic: CGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: TCAAAGATGAGG TTTCCAAGCATCAANCCGTTTTAAGCATATTNGACAAGAAGCCTGTCATTGEST: gi|67574145|gb|BJ946969.1|BJ946969
genomic: TCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTGEST: gi|162233652|gb|FC409411.1|FC409411
genomic: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
EST: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGG TTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
genomic: AGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagatt ... tgatctgcagTTTCCAAGCATCAAACCGTTTTAAGCATATTTGACAAGAAGCCTGTCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGTGGTCTTCTCTCTGGGCAAGGCTGCGCGCACCACCGGCCAAGCTCTAGATCGTCTCGGTTCACGCTTGCAAGGCGGCAACACGTTCAAAGATGAGGgtaagagattcccatggctaggtctctggattggattcgagatcttggattgcaggtgcggcattgatcgggtgggagtcggtggtggtaattagggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG