1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attccagtagcgtgttttggatttctaatggttgtttccattacagtgtcgtgcctactatttcaggcgtctgattttattgtttcttctctgtttttagCAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGTCTCGCCGGTTCGCCGAGGTAGAAGCCCCAGTCGATCGCCCCCACCTAGA
species | Physcomitrella patens |
transcript | PP1S207_102V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAG CAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGTEST: gi|162253397|gb|FC430031.1|FC430031
genomic: CCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAGgtacgttgag ... ctgtttttagCAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGT
EST: CCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAG ---TCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGTEST: gi|208369315|gb|DC955860.1|DC955860
genomic: CCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAGgtacgttgag ... ctgtttttagCAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGT
EST: CCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAG CAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGT
genomic: CCCACGGTATCGTCGCAGTCCAAGCTATGGCTATGGTGGCCGGAGgtacgttgag ... ctgtttttagCAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGT
gtgtcgtgcctactatttcaggcgtctgattttattgtttcttctctgtttttagCAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGTCTCGCCGGTTCGCCGAGGTAGAAGCCCCAGTCGATCGCCCCCACCTAGA
gtctgat putative branch site (score: 20)
ttttattgtttcttct CT-rich tract
attttattgtttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccagtagcgtgttttggatttctaatggttgtttccattacagtgtcgtgcctactatttcaggcgtctgattttattgtttcttctctgtttttagCAGTCCGCAGGTTCGAGGAAGGAGCAAATCCTCACCACGCCTAAGAAGTGTCTCGCCGGTTCGCCGAGGTAGAAGCCCCAGTCGATCGCCCCCACCTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC