1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTATGGGTAGCCCGGAAGCCGGCGGGTTTTGCTTTTGTGGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgcagccaggtagaggttctgaagagatatagggatcccggcaggcgcaggacattgatccttctagatggatttggagcaataaagcgattgcaaaatatggtgatgggtctccttcatgcagatcgtgatgtttatgtgtggattttacctcatag
species | Physcomitrella patens |
transcript | PP1S207_102V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACG GTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTEST: gi|208383252|gb|DC928252.1|DC928252
genomic: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgc ... tacctcatagGTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTT
EST: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACG GTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTGEST: gi|162253397|gb|FC430031.1|FC430031
genomic: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgc ... tacctcatagGTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTG
EST: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACG GTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTGEST: gi|208361655|gb|DC942870.1|DC942870
genomic: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgc ... tacctcatagGTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTG
EST: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACG GTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTGEST: gi|208376220|gb|DC914505.1|DC914505
genomic: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgc ... tacctcatagGTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTG
EST: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACG GTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTGEST: gi|208369315|gb|DC955860.1|DC955860
genomic: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgc ... tacctcatagGTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTG
EST: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACG GTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTG
genomic: GGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgc ... tacctcatagGTAAGAATGGTTGGCGAGTTGAGCTCTCTCGGAGTTCAGGCGGAGGCGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATGGGTAGCCCGGAAGCCGGCGGGTTTTGCTTTTGTGGAGTTCGATGATATACGAGATGCACGGGATGCAATTCGGGCTCTTGACGgtaagcgtgcagccaggtagaggttctgaagagatatagggatcccggcaggcgcaggacattgatccttctagatggatttggagcaataaagcgattgcaaaatatggtgatgggtctccttcatgcagatcgtgatgtttatgtgtggattttacctcatag
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