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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctttctgtcatctctatctaagagtggcattcaaactcatcgtattcattaagtttgaggtccatgtcttgataatttgaacttctttgagttttcagGTTGTGCGATTAGAGCTTACGGACCCCCGAGTTAGGAAGTGGTACACTTGTCTGACGCCTCTGATACATCTATTTGTTGAGG

Basic information

species Physcomitrella patens
transcript PP1S206_32V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162223836|gb|FC400090.1|FC400090
EST:     GGAGAAATCCATCCGATGTCTCAAGGATGGCAAATGGAAAATTACGACAG                         GTTGTGCGATTAGAGCTTACGGACCCC
genomic: GGAGAAATCCATCCGATGTCTCAAGGATGGCAAATGGAAAATTACGACAGgtatttctca ... gagttttcagGTTGTGCGATTAGAGCTTACGGACCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcattaagtttgaggtccatgtcttgataatttgaacttctttgagttttcagGTTGTGCGATTAGAGCTTACGGACCCCCGAGTTAGGAAGTGGTACACTTGTCTGACGCCTCTGATACATCTATTTGTTGAGG
                       tcttgat  putative branch site (score: 4)
                                      cttctttg  putative PPT
                         ttgataattt  TA-rich tract