1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcgttgcgggctgacggtgagactctaagcttcaatttcagaagctgttccgagacagcataattgaggactgacaactgtgacctatgcatttcgcagAGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTG
species | Physcomitrella patens |
transcript | PP1S206_32V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGAGCCCGTCTTCTCCGATGACCGAAGCAAGCGCCGCAAGTTGACTG AGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTGEST: gi|18372281|gb|BJ203883.1|BJ203883
genomic: GGAGGAGCCCGTCTTCTCCGATGACCGAAGCAAGCGCCGCAAGTTGACTGgtacatggca ... catttcgcagAGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTG
EST: GGAGGAGCCCGTCTTCTCCGATGACCGAAGCAAGCGCCGCAAGTTGACTG AGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTGEST: gi|162223836|gb|FC400090.1|FC400090
genomic: GGAGGAGCCCGTCTTCTCCGATGACCGAAGCAAGCGCCGCAAGTTGACTGgtacatggca ... catttcgcagAGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTG
EST: GGAGGAGCCCGTCTTCTCCGATGACCGAAGCAAGCGCCGCAAGTTGACTG AGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTG
genomic: GGAGGAGCCCGTCTTCTCCGATGACCGAAGCAAGCGCCGCAAGTTGACTGgtacatggca ... catttcgcagAGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTG
ctgttccgagacagcataattgaggactgacaactgtgacctatgcatttcgcagAGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTG
gactgac putative branch site (score: 7)
ataattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgttgcgggctgacggtgagactctaagcttcaatttcagaagctgttccgagacagcataattgaggactgacaactgtgacctatgcatttcgcagAGGATCACAATTTCTGCAATGCTGACGAAGCAATTACGCTGCATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA