1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCACCAGATTTTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtcatttcgagtgatttggtagcttgtggtcctaatgttaactggttttgtacgagtccatgctcgtggttttctttgaattatagcgcatacgttaggctgtaatggtgtgaccgaaaggtccttatcataataattataatagtaatagtaagggtttgatgttgtttgacag
species | Physcomitrella patens |
transcript | PP1S206_15V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTCEST: gi|37827316|gb|BJ585328.1|BJ585328
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
EST: TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTCEST: gi|37825057|gb|BJ583123.1|BJ583123
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
EST: TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTCEST: gi|37828979|gb|BJ586991.1|BJ586991
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
EST: TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCGGTATAACAATAAGGGTGCGTACATTGTGCTGGAGGCACCAGATTTTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtcatttcgagtgatttggtagcttgtggtcctaatgttaactggttttgtacgagtccatgctcgtggttttctttgaattatagcgcatacgttaggctgtaatggtgtgaccgaaaggtccttatcataataattataatagtaatagtaagggtttgatgttgtttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT