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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagtcatttcgagtgatttggtagcttgtggtcctaatgttaactggttttgtacgagtccatgctcgtggttttctttgaattatagcgcatacgttaggctgtaatggtgtgaccgaaaggtccttatcataataattataatagtaatagtaagggtttgatgttgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTCGACTTGGGCTCTGGTTCAGGGTCAGAAGGGTCATGCGGCAGTGGCAGCG

Basic information

species Physcomitrella patens
transcript PP1S206_15V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37836282|gb|BJ594290.1|BJ594290
EST:     TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG                         GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
EST: gi|37827316|gb|BJ585328.1|BJ585328
EST:     TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG                         GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
EST: gi|37825057|gb|BJ583123.1|BJ583123
EST:     TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG                         GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
EST: gi|37828979|gb|BJ586991.1|BJ586991
EST:     TTTCCACGCCTCANNNNNNNGAGTTTGAAGCTGTTCAACCTCGTCCTAAG                         GTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC
genomic: TTTCCACGCCTCATTTTTTTGAGTTTGAAGCTGTTCAACCTCGTCCTAAGgtacaagtca ... tgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccttatcataataattataatagtaatagtaagggtttgatgttgtttgacagGTAACTCCTTATTACGATTTTGTGAACTCGATCGATTCAGATGAAGAGCTCGACTTGGGCTCTGGTTCAGGGTCAGAAGGGTCATGCGGCAGTGGCAGCG
                                    gtttgat  putative branch site (score: 5)
     tatcataataattata  TA-rich tract