Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtgacaatgacttgtatgcgcaatcacgcttgcgtttgtgtcccctcatcgaagcaattgacggaaaaggggtacctcaagcgtctttctttctgatgttttgaaggtacatcttcgttatggttccattgttcccttgcgtgatgtggggatgtttcagtccaatctcaccgatgtgttctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTCCTGAAGTTTTTGGTGCTGGGCGGTGCCACCACCATTGGATACCTTGGCT

Basic information

species Physcomitrella patens
transcript PP1S206_11V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228302|gb|FC405200.1|FC405200
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162230586|gb|FC407163.1|FC407163
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162221706|gb|FC397931.1|FC397931
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162212850|gb|FC388858.1|FC388858
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162206714|gb|FC383187.1|FC383187
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162232514|gb|FC408376.1|FC408376
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162204896|gb|FC381513.1|FC381513
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162201809|gb|FC377743.1|FC377743
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162232934|gb|FC407847.1|FC407847
EST:     ACTGGGACCTTTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTTTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162239546|gb|FC417985.1|FC417985
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162221604|gb|FC397621.1|FC397621
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162260614|gb|FC436618.1|FC436618
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|37851002|gb|BJ609010.1|BJ609010
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208381979|gb|DC923838.1|DC923838
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208382174|gb|DC914821.1|DC914821
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162221190|gb|FC397831.1|FC397831
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162219720|gb|FC395924.1|FC395924
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162264302|gb|FC441404.1|FC441404
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162232782|gb|FC408189.1|FC408189
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162232935|gb|FC407848.1|FC407848
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|67728233|gb|BJ978492.1|BJ978492
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162229771|gb|FC405173.1|FC405173
EST:     ACTGGGACCTTTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162230422|gb|FC407376.1|FC407376
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208380015|gb|DC914565.1|DC914565
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162219430|gb|FC396934.1|FC396934
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162221636|gb|FC397861.1|FC397861
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|67728160|gb|BJ978419.1|BJ978419
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162235233|gb|FC411290.1|FC411290
EST:     ACTGGGACCTCTACGGCAACGACGATTCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208400792|gb|DC925072.1|DC925072
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162228148|gb|FC405925.1|FC405925
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|7067348|gb|AW497203.1|AW497203
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTT
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162248937|gb|FC420318.1|FC420318
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162206169|gb|FC382239.1|FC382239
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|162206168|gb|FC382238.1|FC382238
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208383635|gb|DC907026.1|DC907026
EST:     ACTGGGACCTCTACGGCAACGACAATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208351546|gb|DC909990.1|DC909990
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208376375|gb|DC902714.1|DC902714
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208384136|gb|DC911272.1|DC911272
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208399284|gb|DC916611.1|DC916611
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|67719975|gb|BJ970234.1|BJ970234
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
EST: gi|208382894|gb|DC928319.1|DC928319
EST:     ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAG                         AACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC
genomic: ACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 63

TGAGAAGAGCGTCTACTTTGACCTTGGGGAGATTGACAACACCACCGGGAACTGGGACCTCTACGGCAACGACGATCCTAATCGATACAATGGCTTCCAGgtaaagtgac ... ctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTCCTGAAGTTTTTGGTGCTGGGCGGTGCCACCACCATTGGATACCTTGGCT




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcgtgatgtggggatgtttcagtccaatctcaccgatgtgttctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTCCTGAAGTTTTTGGTGCTGGGCGGTGCCACCACCATTGGATACCTTGGCT
                             atctcac  putative branch site (score: 63)
                                           ttctcatt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaagtgacaatgacttgtatgcgcaatcacgcttgcgtttgtgtcccctcatcgaagcaattgacggaaaaggggtacctcaagcgtctttctttctgatgttttgaaggtacatcttcgttatggttccattgttcccttgcgtgatgtggggatgtttcagtccaatctcaccgatgtgttctcattgcagAACAAGTTCTTTGAGACATTCGCTGGAGCCTTCACCAAGCGTGGTCTTCTCCTGAAGTTTTTGGTGCTGGGCGGTGCCACCACCATTGGATACCTTGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG