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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCGACCATGGCCGTGTCCGGCTTGGCCGGGAGCTCTTTGGCTGGTCAGAAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgattctcttccttcacattgctcgatatcatgtgggtattttgatgcgctgtgtgtggcgttgattaagatgttctttgcgtcagcacccttct...

Basic information

species Physcomitrella patens
transcript PP1S206_11V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228302|gb|FC405200.1|FC405200
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162230586|gb|FC407163.1|FC407163
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162221706|gb|FC397931.1|FC397931
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162212850|gb|FC388858.1|FC388858
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162206714|gb|FC383187.1|FC383187
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162232514|gb|FC408376.1|FC408376
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162204896|gb|FC381513.1|FC381513
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162201809|gb|FC377743.1|FC377743
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162232934|gb|FC407847.1|FC407847
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTGGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTTTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162239546|gb|FC417985.1|FC417985
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162221604|gb|FC397621.1|FC397621
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162260614|gb|FC436618.1|FC436618
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|37851002|gb|BJ609010.1|BJ609010
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208381979|gb|DC923838.1|DC923838
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208382174|gb|DC914821.1|DC914821
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162221190|gb|FC397831.1|FC397831
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162219720|gb|FC395924.1|FC395924
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162264302|gb|FC441404.1|FC441404
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162232782|gb|FC408189.1|FC408189
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162232935|gb|FC407848.1|FC407848
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|67728233|gb|BJ978492.1|BJ978492
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162229771|gb|FC405173.1|FC405173
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162230422|gb|FC407376.1|FC407376
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208380015|gb|DC914565.1|DC914565
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162219430|gb|FC396934.1|FC396934
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162221636|gb|FC397861.1|FC397861
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|67728160|gb|BJ978419.1|BJ978419
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162235233|gb|FC411290.1|FC411290
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208400792|gb|DC925072.1|DC925072
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162228148|gb|FC405925.1|FC405925
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|7067348|gb|AW497203.1|AW497203
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162248937|gb|FC420318.1|FC420318
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162206169|gb|FC382239.1|FC382239
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|162206168|gb|FC382238.1|FC382238
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208383635|gb|DC907026.1|DC907026
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208351546|gb|DC909990.1|DC909990
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208376375|gb|DC902714.1|DC902714
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208384136|gb|DC911272.1|DC911272
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|18370178|gb|BJ201780.1|BJ201780
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCG
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCG
EST: gi|208399284|gb|DC916611.1|DC916611
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|67719975|gb|BJ970234.1|BJ970234
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
EST: gi|208382894|gb|DC928319.1|DC928319
EST:     AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAA                         GGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT
genomic: AAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 129

CCGCGACCATGGCCGTGTCCGGCTTGGCCGGGAGCTCTTTGGCTGGTCAGAAGTTTGCCATCGCCCCCGCCAAGAGCGTCTCCGTTCGATCCCCCTCCAAgtatgtgatt ... cactgagtagGGTCGGAGCTATCAGCGCCAAGTATGGTGAGAAGAGCGTCTACTTTGACCTTGGGGAGATTGACAACACCACCGGGAACTGGGACCTCTACGGCAACGAC




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