1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
CTTTCTGCTTCAAACCAGCTCAAAGTTGTATGCCTGGTCAGGTAACCTGAGCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttacaattctaatttcaccatgttaacgttgaaattggtttcaattatgtgcaagagtacagctgcacgcctgcgttgaggagcatccttaatatttttcctaatattccgaaccggtacttgactggtgcag
species | Physcomitrella patens |
transcript | PP1S100_30V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTTEST: gi|162256364|gb|FC432374.1|FC432374
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTTEST: gi|100393142|gb|BY989764.1|BY989764
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTTEST: gi|162185667|gb|FC362054.1|FC362054
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTTEST: gi|162180210|gb|FC355527.1|FC355527
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTTEST: gi|162228276|gb|FC404056.1|FC404056
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTTEST: gi|162222679|gb|FC397491.1|FC397491
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTTEST: gi|162255247|gb|FC431557.1|FC431557
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTEST: gi|162199756|gb|FC375829.1|FC375829
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGT
EST: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAG CCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
genomic: GCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttaca ... actggtgcagCCTGGCGTAATAGCAAGGCCCGTGAAAGAAAGTTTAGAACCCCCACTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTCTGCTTCAAACCAGCTCAAAGTTGTATGCCTGGTCAGGTAACCTGAGCACTGCCGAAAGCCAGAGGGCTGTCCTGCGAGTGGCAGAAATCTTGAAGgtgtgttacaattctaatttcaccatgttaacgttgaaattggtttcaattatgtgcaagagtacagctgcacgcctgcgttgaggagcatccttaatatttttcctaatattccgaaccggtacttgactggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG