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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcatattgaaggttagttatttatcctgtcatcgcacactgactataaaagtactaacttgctgatatttgtcttttgtatttctcaggagtttcttttttaaagGCGG

Basic information

species Physcomitrella patens
transcript PP1S100_30V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161220|gb|FC337283.1|FC337283
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162256364|gb|FC432374.1|FC432374
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162256364|gb|FC432374.1|FC432374
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162256364|gb|FC432374.1|FC432374
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162256364|gb|FC432374.1|FC432374
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162256364|gb|FC432374.1|FC432374
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|100393142|gb|BY989764.1|BY989764
EST:     ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|100393142|gb|BY989764.1|BY989764
EST:     ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|100393142|gb|BY989764.1|BY989764
EST:     ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|100393142|gb|BY989764.1|BY989764
EST:     ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|100393142|gb|BY989764.1|BY989764
EST:     ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162185667|gb|FC362054.1|FC362054
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162185667|gb|FC362054.1|FC362054
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162185667|gb|FC362054.1|FC362054
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162185667|gb|FC362054.1|FC362054
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162185667|gb|FC362054.1|FC362054
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162180210|gb|FC355527.1|FC355527
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162180210|gb|FC355527.1|FC355527
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162180210|gb|FC355527.1|FC355527
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162180210|gb|FC355527.1|FC355527
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162180210|gb|FC355527.1|FC355527
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162222679|gb|FC397491.1|FC397491
EST:     ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162222679|gb|FC397491.1|FC397491
EST:     ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162222679|gb|FC397491.1|FC397491
EST:     ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162222679|gb|FC397491.1|FC397491
EST:     ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162222679|gb|FC397491.1|FC397491
EST:     ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: ACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162255247|gb|FC431557.1|FC431557
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162199756|gb|FC375829.1|FC375829
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162199756|gb|FC375829.1|FC375829
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162199756|gb|FC375829.1|FC375829
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162199756|gb|FC375829.1|FC375829
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
EST: gi|162199756|gb|FC375829.1|FC375829
EST:     GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG
genomic: GAGGACAAGGTTGCAGCAACGAGAGTTATGAATGAGAAGAATGCCGAACTTAAAGGGCGGGGAGTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactaacttgctgatatttgtcttttgtatttctcaggagtttcttttttaaagGCGG
                                         tttctttttt  CT-rich tract
                                       agtttcttttttaaa  TA-rich tract