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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcactctctttatctccgcttctaagttgataggcttcactggatgtcaacagtcaacattcgatgttcatattgtggctgtcttaagagctgtggctgatgttagaaacgctcgtcgtggttgcagTTGCCCACCCCAGTTCACGAGGACTGGTATCCGCAGCAACGCTCCGTACTGCAAGCGGAACAGCAACGTGGCCAAGTGCAGCCGTAAATCTTTCTTGGAA

Basic information

species Physcomitrella patens
transcript PP1S100_162V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37853058|gb|BJ611066.1|BJ611066
EST:     AACCACTGTGGTGACTACAGTATCTGCAGTGGCGCTGATTCCAAATGCAG                         TTGCCCACCCCAGTTCACGAGGACTGGTATCCGCAGCAACGCTCCGTACTG
genomic: AACCACTGTGGTGACTACAGTATCTGCAGTGGCGCTGATTCCAAATGCAGgttagcactc ... gtggttgcagTTGCCCACCCCAGTTCACGAGGACTGGTATCCGCAGCAACGCTCCGTACTG
EST: gi|37851168|gb|BJ609176.1|BJ609176
EST:     AACCACTGTGGTGACTACAGTATCTGCAGTGGCGNTGATTCCAAATGCAG                         TTGCCCACCCCAGTTCACGAGGACTGGTATCCGCAGCAACGCTCCGTACTG
genomic: AACCACTGTGGTGACTACAGTATCTGCAGTGGCGCTGATTCCAAATGCAGgttagcactc ... gtggttgcagTTGCCCACCCCAGTTCACGAGGACTGGTATCCGCAGCAACGCTCCGTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtggctgtcttaagagctgtggctgatgttagaaacgctcgtcgtggttgcagTTGCCCACCCCAGTTCACGAGGACTGGTATCCGCAGCAACGCTCCGTACTGCAAGCGGAACAGCAACGTGGCCAAGTGCAGCCGTAAATCTTTCTTGGAA
                      ggctgat  putative branch site (score: 4)
                              ttagaaa  TA-rich tract