1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacgcaaatagcatgaagttttcattccgatctctgattcttgcgatccttctcatgttcatttgtgtagatttgagtttagttttattgactattgcagATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCAGCAAGCTTGTTGTCATTACCATTTTCCTTCTCGCGGCACAATGCGCCAG
species | Physcomitrella patens |
transcript | PP1S100_162V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTGTGGGCGTTGCCGTGTGCAGAACCTAGGGATCAGATCCACTCGAGG ATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCAEST: gi|18358743|gb|BJ190802.1|BJ190802
genomic: TCTTGTGGGCGTTGCCGTGTGCAGAACCTAGGGATCAGATCCACTCGAGGgtgcgtgagt ... actattgcagATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCA
EST: TCTTGTGGGCGTTGCCGTGTGCAGAACCTAGGGATCAGATCCACTCGAGG ATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCAEST: gi|18359648|gb|BJ191709.1|BJ191709
genomic: TCTTGTGGGCGTTGCCGTGTGCAGAACCTAGGGATCAGATCCACTCGAGGgtgcgtgagt ... actattgcagATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCA
EST: TCTTGTGGGCGTTGCCGTGTGCAGAACCTAGGGATCAGATCCACTCGAGG ATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCA
genomic: TCTTGTGGGCGTTGCCGTGTGCAGAACCTAGGGATCAGATCCACTCGAGGgtgcgtgagt ... actattgcagATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCA
atccttctcatgttcatttgtgtagatttgagtttagttttattgactattgcagATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCAGCAAGCTTGTTGTCATTACCATTTTCCTTCTCGCGGCACAATGCGCCAG
tattgac putative branch site (score: 2)
agtttagttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgcaaatagcatgaagttttcattccgatctctgattcttgcgatccttctcatgttcatttgtgtagatttgagtttagttttattgactattgcagATTGATTGGAGCTTGCAAAGATGAAGTCGTCTACTGGATTACACGTGGGCAGCAAGCTTGTTGTCATTACCATTTTCCTTCTCGCGGCACAATGCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT