Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacgttgtcttcaaccttacttgccgtaagcggcagagccggtgcaccacaacaatgaggctctagatgcttaactcccaaatcactaatttttgtgacgataatgttgctgaatagtgtcggtgaatggtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCAG

Basic information

species Physcomitrella patens
transcript PP1S100_119V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208400131|gb|DC904779.1|DC904779
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208354589|gb|DC918671.1|DC918671
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162201084|gb|FC378215.1|FC378215
EST:     GAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGC
genomic: GAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTAC-TTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGC
EST: gi|162270829|gb|FC446858.1|FC446858
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|18368195|gb|BJ200280.1|BJ200280
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162256714|gb|FC433232.1|FC433232
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208383018|gb|DC927768.1|DC927768
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|18366685|gb|BJ198764.1|BJ198764
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208347019|gb|DC909331.1|DC909331
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|18335963|gb|BJ167984.1|BJ167984
EST:     CGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162243714|gb|FC421835.1|FC421835
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|7047280|gb|AW477174.1|AW477174
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162212533|gb|FC388509.1|FC388509
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67578175|gb|BJ950342.1|BJ950342
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162243687|gb|FC421834.1|FC421834
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208382474|gb|DC928008.1|DC928008
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162234198|gb|FC410776.1|FC410776
EST:     CCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162216233|gb|FC392650.1|FC392650
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162261341|gb|FC437774.1|FC437774
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162249972|gb|FC427073.1|FC427073
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162149644|gb|FC325837.1|FC325837
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162170156|gb|FC347068.1|FC347068
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162256715|gb|FC433233.1|FC433233
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162203253|gb|FC379350.1|FC379350
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162234199|gb|FC410777.1|FC410777
EST:     CCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|22491886|gb|BU051809.1|BU051809
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67571735|gb|BJ944559.1|BJ944559
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162261340|gb|FC437773.1|FC437773
EST:     AGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: AGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208366738|gb|DC931395.1|DC931395
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162236868|gb|FC412611.1|FC412611
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162199825|gb|FC376405.1|FC376405
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67508127|gb|BJ940998.1|BJ940998
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162199824|gb|FC376404.1|FC376404
EST:     AGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: AGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162246287|gb|FC419901.1|FC419901
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162219474|gb|FC396458.1|FC396458
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208398013|gb|DC924899.1|DC924899
EST:     CCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGNCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162201085|gb|FC378216.1|FC378216
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208375400|gb|DC940482.1|DC940482
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208382553|gb|DC923195.1|DC923195
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|18332068|gb|BJ164080.1|BJ164080
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162176440|gb|FC353833.1|FC353833
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|19788947|gb|BQ041013.1|BQ041013
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162200584|gb|FC377819.1|FC377819
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|18367585|gb|BJ199668.1|BJ199668
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162246286|gb|FC419900.1|FC419900
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208357604|gb|DC914018.1|DC914018
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162149645|gb|FC325838.1|FC325838
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67695108|gb|BJ955341.1|BJ955341
EST:     CGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|7147726|gb|AW509591.1|AW509591
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162216234|gb|FC392651.1|FC392651
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67507650|gb|BJ940530.1|BJ940530
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208356346|gb|DC914264.1|DC914264
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162202012|gb|FC377218.1|FC377218
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162249971|gb|FC427072.1|FC427072
EST:     GAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: GAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162225083|gb|FC401707.1|FC401707
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162238189|gb|FC414795.1|FC414795
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162263407|gb|FC438630.1|FC438630
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67572804|gb|BJ945628.1|BJ945628
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67574621|gb|BJ947445.1|BJ947445
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67507766|gb|BJ940644.1|BJ940644
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162276678|gb|FC452256.1|FC452256
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208399226|gb|DC916581.1|DC916581
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162202011|gb|FC377217.1|FC377217
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|100418855|gb|BY975772.1|BY975772
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|67701042|gb|BJ961275.1|BJ961275
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208376320|gb|DC902687.1|DC902687
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208386827|gb|DC953494.1|DC953494
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162203252|gb|FC379349.1|FC379349
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162263730|gb|FC438914.1|FC438914
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|208390867|gb|DC945898.1|DC945898
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162170155|gb|FC347067.1|FC347067
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|100388375|gb|BY951977.1|BY951977
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162225082|gb|FC401706.1|FC401706
EST:     TGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: TGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
EST: gi|162248640|gb|FC424493.1|FC424493
EST:     CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAG                         GTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA
genomic: CTGGTGGCCGAGCCGTCCCAACTAACGAGGAGTTAATGGAAAGCAGCCAGgtaaacgttg ... gtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaatttttgtgacgataatgttgctgaatagtgtcggtgaatggtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCAG
 cactaat  putative branch site (score: 2)
                ataatgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacgttgtcttcaaccttacttgccgtaagcggcagagccggtgcaccacaacaatgaggctctagatgcttaactcccaaatcactaatttttgtgacgataatgttgctgaatagtgtcggtgaatggtcactgcagGTACTTCTCGGTGCTGCCCAGGGCCAAAAAATTGAGAACACCAAGCTTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT