Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcggtgctcaatttgataaatggggttgctagtgacgaaagtcgcttctctaattagctagccaggttcctgtttagatgatcagaacctgatcgagactttgtcaatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCATACGGCACCACCAGCTACTGCAGGAACCAAGGATGCAGGATTCGGAGGCT

Basic information

species Physcomitrella patens
transcript PP1S100_119V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208400131|gb|DC904779.1|DC904779
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162270829|gb|FC446858.1|FC446858
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|18368195|gb|BJ200280.1|BJ200280
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|18366685|gb|BJ198764.1|BJ198764
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|208347019|gb|DC909331.1|DC909331
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162243714|gb|FC421835.1|FC421835
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|7047280|gb|AW477174.1|AW477174
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCATGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162212533|gb|FC388509.1|FC388509
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|67578175|gb|BJ950342.1|BJ950342
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|208382474|gb|DC928008.1|DC928008
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162261341|gb|FC437774.1|FC437774
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162249972|gb|FC427073.1|FC427073
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162170156|gb|FC347068.1|FC347068
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162256715|gb|FC433233.1|FC433233
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162203253|gb|FC379350.1|FC379350
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|22491886|gb|BU051809.1|BU051809
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|67571735|gb|BJ944559.1|BJ944559
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|208366738|gb|DC931395.1|DC931395
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162236868|gb|FC412611.1|FC412611
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162199825|gb|FC376405.1|FC376405
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|67508127|gb|BJ940998.1|BJ940998
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162246287|gb|FC419901.1|FC419901
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162219474|gb|FC396458.1|FC396458
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162201085|gb|FC378216.1|FC378216
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|208375400|gb|DC940482.1|DC940482
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|18332068|gb|BJ164080.1|BJ164080
EST:     TTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: TTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162176440|gb|FC353833.1|FC353833
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162200584|gb|FC377819.1|FC377819
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|18367585|gb|BJ199668.1|BJ199668
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|208357604|gb|DC914018.1|DC914018
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162149645|gb|FC325838.1|FC325838
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|7147726|gb|AW509591.1|AW509591
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162216234|gb|FC392651.1|FC392651
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|67507650|gb|BJ940530.1|BJ940530
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|208356346|gb|DC914264.1|DC914264
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162202012|gb|FC377218.1|FC377218
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162225083|gb|FC401707.1|FC401707
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162238189|gb|FC414795.1|FC414795
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162263407|gb|FC438630.1|FC438630
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|67572804|gb|BJ945628.1|BJ945628
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|67574621|gb|BJ947445.1|BJ947445
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|67507766|gb|BJ940644.1|BJ940644
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162276678|gb|FC452256.1|FC452256
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|100418855|gb|BY975772.1|BY975772
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|208376320|gb|DC902687.1|DC902687
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162263730|gb|FC438914.1|FC438914
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|100388375|gb|BY951977.1|BY951977
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
EST: gi|162248640|gb|FC424493.1|FC424493
EST:     GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAG                         ATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT
genomic: GCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 35 (downstream exon)
Score: 7

TTCGCACTTGTCTTCCTTGGGATTCATAAACTGCTGACTTGTACCTCGCCGCCATTGTTCTTACTTCGACGTCTGGGCCAGATTACTGCAACTAATCAAGgtacgcggtg ... caatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCATACGGCACCACCAGCTACTGCAGGAACCAAGGATGCAGGATTCGGAGGCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agccaggttcctgtttagatgatcagaacctgatcgagactttgtcaatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCATACGGCACCACCAGCTACTGCAGGAACCAAGGATGCAGGATTCGGAGGCT
                           acctgat  putative branch site (score: 7)
                                       ctttgtc  putative PPT
             tttagat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgcggtgctcaatttgataaatggggttgctagtgacgaaagtcgcttctctaattagctagccaggttcctgtttagatgatcagaacctgatcgagactttgtcaatgtgtagATGAACTTCTTCAAGAAGGCTCAGGAGTTTGCCGATACGGGTATCGACCATACGGCACCACCAGCTACTGCAGGAACCAAGGATGCAGGATTCGGAGGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG