1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCCTCCAAACATGATTGTCATTCGCTCCTTTGATGTCAACAAGCCTGGTTCAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattccctcgtgtgtcatgtaattagattttttatcactacttttgggttattaggtatgacttaaattgtgatgcttcttttatag
species | Oryza sativa |
transcript | LOC_Os12g41400.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGA GGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCC-TGGCATTGTAATGEST: gi|58683561|gb|CK072248.1|CK072248
genomic: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattc ... tcttttatagGGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATG
EST: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGA GGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATGEST: gi|58604734|gb|CK015262.1|CK015262
genomic: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattc ... tcttttatagGGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATG
EST: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGA GGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATGEST: gi|87006427|gb|CI293218.1|CI293218
genomic: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattc ... tcttttatagGGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATG
EST: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGA GGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATGEST: gi|58673990|gb|CK062676.1|CK062676
genomic: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattc ... tcttttatagGGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATG
EST: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGA GGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGGCCTGGCATTGTAATGEST: gi|58677537|gb|CK066224.1|CK066224
genomic: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattc ... tcttttatagGGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATG
EST: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGA GGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGACCTGGNCATTGTAATEST: gi|218504380|gb|FG947139.1|FG947139
genomic: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattc ... tcttttatagGGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGG-CATTGTAAT
EST: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGA GGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATG
genomic: CAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattc ... tcttttatagGGAGTTTTGAGGGTGAACCAGAACATTGAAGTCCGCCCTGGCATTGTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTCCAAACATGATTGTCATTCGCTCCTTTGATGTCAACAAGCCTGGTTCAGAGGTTGATGAAATTAGGGGTGGTGTAGCTGGTGGCAGCATCCTCAGAgtatgtattccctcgtgtgtcatgtaattagattttttatcactacttttgggttattaggtatgacttaaattgtgatgcttcttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG