1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttgctactgtccattattatcttgtagatgggtacatctgtctgtctatttgtttatgggttattttatttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAGTATAACATTGATGTGATATGTGAATACATTGTGAAGAAAATCCCCATTC
species | Oryza sativa |
transcript | LOC_Os12g41400.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAG GGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAGEST: gi|58683561|gb|CK072248.1|CK072248
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAGgttgctactg ... ttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAG
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAG GGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAGEST: gi|58675865|gb|CK064552.1|CK064552
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAGgttgctactg ... ttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAG
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAG GGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAGEST: gi|58677537|gb|CK066224.1|CK066224
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAGgttgctactg ... ttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAG
EST: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAG GGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAGEST: gi|218504380|gb|FG947139.1|FG947139
genomic: AGGAAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAGgttgctactg ... ttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAG
EST: AAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAG GGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAG
genomic: AAAGTGCAGCAATGAATCAACATGAAGCGATCCAGAAATTCATCCAGgttgctactg ... ttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAG
tagatgggtacatctgtctgtctatttgtttatgggttattttatttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAGTATAACATTGATGTGATATGTGAATACATTGTGAAGAAAATCCCCATTC
ttattttatttctct CT-rich tract
ttattttatttctcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctactgtccattattatcttgtagatgggtacatctgtctgtctatttgtttatgggttattttatttctctatagGGTACCATAGCTGAAGGTGCTCCGGTGGTGCCAATATCTGCTCAGCTTAAGTATAACATTGATGTGATATGTGAATACATTGTGAAGAAAATCCCCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA