1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTATTTGCACTATGGCGGTTTTGCTTCTCGCGCGCACATCCTAGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTGgtacctagatactagcttattacttgttctgtttactatacgcatcgaccctttaatcctttaagattcatataatcaattaacgtttagtgcttaatgaaccaagtgagatttaatttgttttgttgatttggcaaaaacaag
species | Oryza sativa |
transcript | LOC_Os12g02980.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTG GTAACTTCACCTACAACGGCAAGCAGTACGACGCAACGEST: gi|58593939|gb|CF992247.1|CF992247
genomic: AGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTGgtacctagat ... caaaaacaagGTAACTTCACCTACAACGGCAAGCAGTACGACGCAACG
EST: AGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTG GTAACTTCACCTACAACGGCAAGCAGTACGACGCAACGGCCGCACCACACGEST: gi|29619276|gb|CB624288.1|CB624288
genomic: AGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTGgtacctagat ... caaaaacaagGTAACTTCACCTACAACGGCAAGCAGTACGACGCAACGGCCGCACCACAAG
EST: AGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTG GTAACTTCACCTACAACGGC
genomic: AGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTGgtacctagat ... caaaaacaagGTAACTTCACCTACAACGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTTGCACTATGGCGGTTTTGCTTCTCGCGCGCACATCCTAGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTGgtacctagatactagcttattacttgttctgtttactatacgcatcgaccctttaatcctttaagattcatataatcaattaacgtttagtgcttaatgaaccaagtgagatttaatttgttttgttgatttggcaaaaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC