Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcaattccacaatgatatacatcatatcatacaaaatttttaactcaaaaccatttcttgctttgattcttaataactttttgttcttaataatccctttaattagtactctgggtcttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGGATCAACGTTCTTGAGGGATCCCAGGAAGGGTCATACATATGGGTTGCTC

Basic information

species Oryza sativa
transcript LOC_Os12g02980.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g02980.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G085711_T02 (Zea mays), 3'ss of exon 3
gtacgtgcaattccacaat--gatataca-tcatatcatacaaaatttttaactcaaaaccatttcttgctttgattcttaataactttttgttcttaataatccct-ttaattagta-ctctgggtcttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGGATCAACGTTCTTGAGGGATCCCAGGAAGGGTCATACATATGGGTTGCTC
||  |   ||||  |  |   ||| | || || | |  |   | || |   |   |    |||        ||  | |||        |    | | | | |||||   | ||||| | || ||    || |||||||| || ||  | |||||||  ||||||||||  ||||| || || ||||||||||| ||||||||||| || |||||||  || ||| |||||       
gttagattaatttaattactcgatctccagtcttgtgttggcacatgtgataaatatttgcatcatccatgttagtgcttgg----actaaaatatgactgatcccagctgattagaagctttgatctttcatacagGTCAGAGACCTGGTCCACAAGAAGAGCAAATTCCAGTACAAGCCCAACTGGATCAATGTTCTTGAGGGGTCTCAGGAAGCATCCTACCTATGG-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58612765|gb|CK040477.1|CK040477
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|88301463|gb|CI597156.1|CI597156
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGT
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGT
EST: gi|29657813|gb|CB654088.1|CB654088
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCACATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|29660868|gb|CB657143.1|CB657143
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|58668446|gb|CK057132.1|CK057132
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|29619276|gb|CB624288.1|CB624288
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|66924334|gb|CX111182.1|CX111182
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|88717473|gb|CI740983.1|CI740983
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|29616330|gb|CB621342.1|CB621342
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|4715162|gb|AU056279.1|AU056279
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCCGAACT
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGG-ATGTAGTCCACACCAAGAGCAAATATCAGTATAACCC-GAACT
EST: gi|29616586|gb|CB621598.1|CB621598
EST:     CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
EST: gi|88720452|gb|CI743751.1|CI743751
EST:     CCGGACTCAGACTTATTGGACATGAAAAGGCGAACCAGATTCTTGAAGCG                         GTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCGgtacgtgcaa ... cttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataactttttgttcttaataatccctttaattagtactctgggtcttaatacagGTTAGGGATGTAGTCCACACCAAGAGCAAATATCAGTATAACCCGAACTGGATCAACGTTCTTGAGGGATCCCAGGAAGGGTCATACATATGGGTTGCTC
      tttttgttcttaataa  TA-rich tract