1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tactgatgaacagacgtatatatacatgcactactatgttccatgttaggttaataggtttgtgacttactgactttgtgtctgtctcttatttttttagTTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTGTGTGATGAGTCGTGCGCATCCGGACGTCTGTGAATATTTAATTGGTAAG
species | Oryza sativa |
transcript | LOC_Os11g45750.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGATCAAAACTAAAAGTCTCAAGAGGTGTTGATGATGCGAAGTGATCAG TTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTGEST: gi|88849255|gb|CI087777.1|CI087777
genomic: ACGATCAAAACTAAAAGTCTCAAGAGGTGTTGATGATGCGAAGTGATCAGgtgagcagca ... atttttttagTTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTG
EST: ACGATCAAAACTAAAAGTCTCAAGAGGTGTTGATGATGCGAAGTGATCAG TTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTGEST: gi|86890017|gb|CI320006.1|CI320006
genomic: ACGATCAAAACTAAAAGTCTCAAGAGGTGTTGATGATGCGAAGTGATCAGgtgagcagca ... atttttttagTTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTG
EST: ACGATCAAAACTAAAAGTCTCAAGAGGTGTTGATGATGCGAAGTGATCAG TTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTG
genomic: ACGATCAAAACTAAAAGTCTCAAGAGGTGTTGATGATGCGAAGTGATCAGgtgagcagca ... atttttttagTTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTG
ttaggttaataggtttgtgacttactgactttgtgtctgtctcttatttttttagTTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTGTGTGATGAGTCGTGCGCATCCGGACGTCTGTGAATATTTAATTGGTAAG
tactgac putative branch site (score: 1)
tctgtctcttattttt putative PPT
tctcttattttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgatgaacagacgtatatatacatgcactactatgttccatgttaggttaataggtttgtgacttactgactttgtgtctgtctcttatttttttagTTGTTTAAAAGATCTGAGTTCAGAGGGATTGAGCTTGGAGACGTGCTAGTGTGTGATGAGTCGTGCGCATCCGGACGTCTGTGAATATTTAATTGGTAAG
- ctgatga
- - - - - - - - - - - tacatgc
- - - - - - - - - - - - - - - - - - - ttccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttactg