1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgcattttactgaactaaagttgtttttagtggtaatgctaattcaaacaccatatttatcatgttcctatttttatctttcccgtcctcttatcgcagGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCA
species | Oryza sativa |
transcript | LOC_Os11g29690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATG GTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGEST: gi|86899515|gb|CI295449.1|CI295449
genomic: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGgtaatgcatt ... cttatcgcagGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGG
EST: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATG GTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGEST: gi|27546176|gb|CA764490.2|CA764490
genomic: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGgtaatgcatt ... cttatcgcagGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGG
EST: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATG GTGTTCCACGAATCTTCACAGGAAGTGGTCAGGCAGAAATCTCTGCGCTGGEST: gi|88241735|gb|CI241584.1|CI241584
genomic: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGgtaatgcatt ... cttatcgcagGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGG
EST: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATG GTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGG
genomic: AAGTGGTGATATCGTATTGATGGCTGGGGAGGCACGGGAATGCTTCCATGgtaatgcatt ... cttatcgcagGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGG
caaacaccatatttatcatgttcctatttttatctttcccgtcctcttatcgcagGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCA
ttcctatttttatctt CT-rich tract
tatttttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgcattttactgaactaaagttgtttttagtggtaatgctaattcaaacaccatatttatcatgttcctatttttatctttcccgtcctcttatcgcagGTGTTCCACGAATCTTCACAGGAAGTGATCAGGCAGAAATCTCTGCGCTGGTTCCGCAGCTATCTGCTGAAGATGACTCTTTTATCTTAAACTACATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG