1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAgtatgtaatttgctccttcaacagtgactgtccttttagattgatataaatgataggaaataatctcaaagtttcatgttcctatccctgtctatag
species | Oryza sativa |
transcript | LOC_Os11g29690.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAA GTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAACEST: gi|27546176|gb|CA764490.2|CA764490
genomic: TGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAgtatgtaatt ... ctgtctatagGTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAAC
EST: TGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAA GTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAAC
genomic: TGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAgtatgtaatt ... ctgtctatagGTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTCCTATCTGCTCTTGCAAAAAAGATGGCCATTCCAGCCATGCCATCTGGAGAGGAATTCAAGCCAGAGGCCGCCATAGTGAACTATTATGGCCCAAgtatgtaatttgctccttcaacagtgactgtccttttagattgatataaatgataggaaataatctcaaagtttcatgttcctatccctgtctatag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA