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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggcttgcattcccaatggacaagcaattgttagtgaagttcaagttaacaacatgacttacctgagagcagTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGG

Basic information

species Oryza sativa
transcript LOC_Os11g27730.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660172|gb|CB656447.1|CB656447
EST:     TTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAG                         TTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACAC
genomic: TTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGgtgagggctt ... ctgagagcagTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACAC
EST: gi|29660171|gb|CB656446.1|CB656446
EST:     TTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAG                         TTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACAC
genomic: TTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATGAGgtgagggctt ... ctgagagcagTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggacaagcaattgttagtgaagttcaagttaacaacatgacttacctgagagcagTTGTGAAGGAGGTACTAAGGCTGCACCCTGTGGCACCACTCCTTGCGACACACGTCTCCATGGCTGACTGCAACATCAATGGGTATATGATCCCTTCAGG
                                      gacttac  putative branch site (score: 2)
 cttacct  CT-rich tract
 aattgtta  TA-rich tract