1 5' 3' | 2 5' 3' | 3 5' 3' |
...cctataatctaattgtgcataaaagtgtcaattggataaatatattgtaatttaacagggtcatcttaagtttgatcttcaccaaattataaaccaacagGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATG
species | Oryza sativa |
transcript | LOC_Os11g27730.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAG GACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCEST: gi|29660171|gb|CB656446.1|CB656446
genomic: TTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGgtaattaatt ... aaaccaacagGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACC
EST: TTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAG GACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACC
genomic: TTAGGAAGGAGTATGGTCTCACCGAAGAACATGTCAAAGCTATTCTTGAGgtaattaatt ... aaaccaacagGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACC
tgtaatttaacagggtcatcttaagtttgatcttcaccaaattataaaccaacagGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATG
aaattataaaccaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctataatctaattgtgcataaaagtgtcaattggataaatatattgtaatttaacagggtcatcttaagtttgatcttcaccaaattataaaccaacagGACGTCTTTATTGCGGGAACACAGTCGTCTGCTCGGGTGATCGAATTCACCTTTGCTGAGCTCATGCGGAAGCCACACATGCTCAAGAAGGTGCAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG