1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaaacttttttttacaaaaacaataaggaaaatgttgtgcatgtaggtcatgcaattgattattagagtatttgcttttgcacacagGATATACAATTCCGTCTGGGTGGCTAGTCATGATTAGCCCCATGGGAGTGCATCTAAACCCAAAATTGTTCGAGGATCCACTCAAATTTGATCCATGGAG
species | Oryza sativa |
transcript | LOC_Os11g18570.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACCT-GTGGTTTCA-GAAAGCACTAACAGACGTGCAAGTAAACG GATATACAATTCCGTCTGGGTGGCTAGGTCATGATTAGCCCCATGGGAGTGEST: gi|2427544|gb|C72007.1|C72007
genomic: TACCTGGTGGTTTCAGGAAAGCACTAACAGACGTGCAAGTAAACGgtaaaaactt ... ttgcacacagGATATACAATTCCGTCTGGGTGGCTA-GTCATGATTAGCCCCATGGGAGTG
EST: CAGACGTGCAAGTAAACG GATATACAATTCCGTCTGGGTGGCTAGTCATGATTAGCCCCATGGGAGTGCEST: gi|109974324|gb|DT806846.1|DT806846
genomic: CAGACGTGCAAGTAAACGgtaaaaactt ... ttgcacacagGATATACAATTCCGTCTGGGTGGCTAGTCATGATTAGCCCCATGGGAGTGC
EST: GGTTATACCTGGTGGTTTCAGGAAAGCACTAACAGACGTGGAAGTAAACG GATATACAATTCCGTCTGGATGGCTAGTCATGATTAGCCCCATGGGAGTGC
genomic: GGTTATACCTGGTGGTTTCAGGAAAGCACTAACAGACGTGCAAGTAAACGgtaaaaactt ... ttgcacacagGATATACAATTCCGTCTGGGTGGCTAGTCATGATTAGCCCCATGGGAGTGC
tgttgtgcatgtaggtcatgcaattgattattagagtatttgcttttgcacacagGATATACAATTCCGTCTGGGTGGCTAGTCATGATTAGCCCCATGGGAGTGCATCTAAACCCAAAATTGTTCGAGGATCCACTCAAATTTGATCCATGGAG
aattgat putative branch site (score: 39)
tttgctttt putative PPT
attattagagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaacttttttttacaaaaacaataaggaaaatgttgtgcatgtaggtcatgcaattgattattagagtatttgcttttgcacacagGATATACAATTCCGTCTGGGTGGCTAGTCATGATTAGCCCCATGGGAGTGCATCTAAACCCAAAATTGTTCGAGGATCCACTCAAATTTGATCCATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA