1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAAAAATCACTCCTGCCAGAACTAGAGAACTCCATGAGGGAAAGCTTGGCGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAATgtaagttaacatctgcatttctacataagtattcacaattgcacagtgctcataaaatcatcatgatgttttactatgattaatttctattgtgcag
species | Oryza sativa |
transcript | LOC_Os11g18570.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAAT ATGATCTTCGGCCTAGCTGCCAAACATTTGATTGGCCTCGACATCACCAATEST: gi|88417356|gb|CI579017.1|CI579017
genomic: CGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAATgtaagttaac ... tattgtgcagATGATCTTCGGCCTAGCTGCCAAACATTTGATTGGCCTCGACATCACCAAT
EST: CGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAAT ATGATCTTCGGCCTAGCTGCCAAACATTTGATTGGCCTCGACATCACCAATEST: gi|29644153|gb|CB649160.1|CB649160
genomic: CGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAATgtaagttaac ... tattgtgcagATGATCTTCGGCCTAGCTGCCAAACATTTGATTGGCCTCGACATCACCAAT
EST: CGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAAT ATGATCTTCGGCCTAGCTGCCAAACATTTGATTGGCCTCGACATCACCAAT
genomic: CGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAATgtaagttaac ... tattgtgcagATGATCTTCGGCCTAGCTGCCAAACATTTGATTGGCCTCGACATCACCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAAAATCACTCCTGCCAGAACTAGAGAACTCCATGAGGGAAAGCTTGGCGTCATGGATAGGAAAACCTAGTGTCGAGGTGAATGATGGCGTGTCAAATgtaagttaacatctgcatttctacataagtattcacaattgcacagtgctcataaaatcatcatgatgttttactatgattaatttctattgtgcag
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