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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccattctatttcgttattccttttttctttttttagaatattccatagcttccttgggtaatgaatactttgtcatgaatttgcatttgtacacgtgatatttaaagtaatggatggttggattgtgcaattttcag

Basic information

species Oryza sativa
transcript LOC_Os11g03470.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03470.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G151977_T01 (Zea mays), 5'ss of exon 2
GCCGACGACCTCCACTCCAACGGCTTCGACGACGCGCTCCTCGCTGATCTCTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccattctatttcgttattccttttttctttttttagaatattccatagcttccttgggtaatgaatactttgtcatgaatttgcatttgtacacgtgatatttaaagtaatggatggttggattgtgcaattttcag
||||| ||  ||||||||| |||| |||| |||||||||||| |  | |||||||||||||||||||| ||||| ||||| || ||||||||||  |||||||  |             || |  ||||   |  || |||  || |   |     ||| | | |   |   || |    |   ||    | |||     | | | || |                                 
GCCGAAGATGTCCACTCCACCGGCCTCGATGACGCGCTCCTCACCCAGCTCTGCGCCGCCAAGTCCGCAGGCTCTCCCCTCTCCTCCCTGCTCGGCCGAGgtagacaggcatcccccaatt-tgactttgcccacttattacgatgt---acgcgctccgtcgttttcgttgacatgtagaatgatcgatacttgggtgtgcggt-ttcag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88346916|gb|CI628586.1|CI628586
EST:     CTGCGCCGCCAAGTCCGNCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAG                         GGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
genomic: CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccat ... caattttcagGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
EST: gi|29685331|gb|CB681606.1|CB681606
EST:     CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAG                         GGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
genomic: CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccat ... caattttcagGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
EST: gi|88719956|gb|CI745255.1|CI745255
EST:     CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAG                         GGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
genomic: CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccat ... caattttcagGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
EST: gi|88362531|gb|CI623871.1|CI623871
EST:     CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAG                         GGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
genomic: CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccat ... caattttcagGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
EST: gi|88363078|gb|CI616235.1|CI616235
EST:     CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAG                         GGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
genomic: CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccat ... caattttcagGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
EST: gi|88376986|gb|CI597770.1|CI597770
EST:     CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAG                         GGCAATGTCAGCTATTCAACAACAGTGAGGCTAGGAGGAAAGTCATTGACA
genomic: CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccat ... caattttcagGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
EST: gi|88721484|gb|CI744783.1|CI744783
EST:     CTGCGCCGNCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAG                         GGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA
genomic: CTGCGCCGCCAAGTCCGCCGGCTCGCCCCTATCTTCCCTGCTCGCTCGAGgtatccccat ... caattttcagGGCAATGTCAGCTATTCAACAACACTGAGGCTAGGAGGAAAGTCATTGACA