1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatccttttattgtgctatgccctctgaatcactaattagtgtttcaatactagcatactattgtcagagacacgtaggcccatttctgtgcattttgtaaaggttctttcaatggtagtgtagagtaacatccccattttgtag
species | Oryza sativa |
transcript | LOC_Os11g03470.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|29685332|gb|CB681607.1|CB681607
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|89163490|gb|CI100380.1|CI100380
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|88291219|gb|CI527609.1|CI527609
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|86879665|gb|CI327232.1|CI327232
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCT-TAAGATTGAAAGCACA-G GTGGCCAAGTGGGCCTTGAAGAACTCCCG-AAAACTCTGCACTGGGAAGGTEST: gi|88460564|gb|CI532037.1|CI532037
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGT-GCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGT
EST: CGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|86535227|gb|CI175433.1|CI175433
genomic: CGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|88964320|gb|CI045513.1|CI045513
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|86601034|gb|CI356791.1|CI356791
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|88966008|gb|CI006763.1|CI006763
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|89163605|gb|CI100495.1|CI100495
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTAGGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|86491794|gb|CI134427.1|CI134427
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|86604043|gb|CI114817.1|CI114817
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|86491655|gb|CI134288.1|CI134288
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|88463800|gb|CI527127.1|CI527127
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: CTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|86480044|gb|CI122677.1|CI122677
genomic: CTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTTEST: gi|89195888|gb|CI007307.1|CI007307
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
EST: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGG GTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
genomic: TCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatcc ... cattttgtagGTGCCAAGTGGGCCTTGAAGAACTCCCGAAAAACTCTGCACTGGGAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAAGAGTAAAGGCAGCATCTTTGAAAGGAAATGTTCTTCGCTATGTCTGTAAGATTGAAAGCACAGGgtatgtatccttttattgtgctatgccctctgaatcactaattagtgtttcaatactagcatactattgtcagagacacgtaggcccatttctgtgcattttgtaaaggttctttcaatggtagtgtagagtaacatccccattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA