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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaatttattcattcattggacattataacatcaatgtgtactcagtattcaattccttatctgtaattacagatttcatatttaccgaaagtctactgatgcttgtgataagtgcacttactcagttgttcaattttggtag

Basic information

species Oryza sativa
transcript LOC_Os11g03470.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03470.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G151977_T01 (Zea mays), 5'ss of exon 7
GTACACTTGGTTATGTGATGAGTGAGCTGGAGGATGGAAAGAAATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtct---aaaaatttattcattcattggacattataacatcaatgtgtactcagtattcaatt--ccttatctgt-------------aattacagatttcat--attt-----accgaaagtctactgatgcttgtgataagtgcacttactcagttgttcaattttggtag-------------------------
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |   | | || | || ||  |||    |||| |      || ||| | || | |  | |    ||| | |||             ||  | ||  |  ||  ||||     | | || ||| |   |  | |     |  |  |||   | |  ||||     |  |||                          
GTACACTTGGGTATGTGATGAGTGAGCTTGAGGATGGAAAGAAATTTAGTGAAGTTGTAAAAACTGCCAAGTCCCTTGGCTATACAGAACCAGgtattgcagatatcttttgatatatttt-tattacagttagtatatgtgc-caatttctagtagatcttctttgtgaagtagagctcaaacaaaagtctctatgaatttgaataatctaaggtcaaggaacacatccataatatttactcctttacctgtttgcaatatgtatttattgaagtgtttttgtttgccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29685331|gb|CB681606.1|CB681606
EST:     ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAG                         ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
genomic: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaat ... attttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
EST: gi|46573748|gb|CN487730.1|CN487730
EST:     ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAG                         ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAGG
genomic: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaat ... attttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
EST: gi|87036135|gb|CI189582.1|CI189582
EST:     ATTTAGTGAAGTTGTG-AAACTGCCAAGTCTCTTGGCTATACAGAACCAG                         ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG
genomic: ATTTAGTGAAGTTGTGAAAACTGCCAAGTCTCTTGGCTATACAGAACCAGgtctaaaaat ... attttggtagATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG