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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTgtatgcatacgccactagtaattccttcatttcactattaaatgttattatacttttcccccaatcttaatgaaatttggtcggcgtttctttcgccgac...

Basic information

species Oryza sativa
transcript LOC_Os11g03470.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03470.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G151977_T01 (Zea mays), 5'ss of exon 5
GAGGATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTgtatgcatacgcc-actagtaattccttcatttcactat-taaatgttattatacttttcccccaatcttaatgaaatttggtcggcgtttctttcgccgac--
||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||  |  |     |  |  ||| | |||||   |   |  |  || ||| |  || |  | |  | |  |    |||  |      | || ||   |||  
GAGGATTTTCAGAAGTTGGTCTCCAACTTCCGTCGGATAAGATTTGAATCTACTgtatgtttgtgtttggttttttttcttccattttgatgcctgtacatttttacaaattgctgctatgcatttt----ttttctaactactactatccatgacca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29685331|gb|CB681606.1|CB681606
EST:     ATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACT                         GTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT
genomic: ATTTCGAAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTgtatgcatac ... ctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT
EST: gi|46573748|gb|CN487730.1|CN487730
EST:     AAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACT                         GTCGGAGCCGGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT
genomic: AAAAGTTGGTCTCCAACTTCCGTCGCATAAGATTTGAATCTACTgtatgcatac ... ctactcttagGTTGGAGCCAGTCTGCCTGTAATAGCTTCTGTGACTCGTATTATTGCCTCT