1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gacatttgtgacaaacatttatattcacattttttttgcatagttaagttagttaatttttgttttgttgagattatcaatatcgagctgcttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAG
species | Oryza sativa |
transcript | LOC_Os11g01890.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|88852689|gb|CI008882.1|CI008882
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|86436668|gb|CI118390.1|CI118390
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCCAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|29662875|gb|CB659150.1|CB659150
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|58603685|gb|CK014213.1|CK014213
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|88218129|gb|CI217978.1|CI217978
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCEST: gi|86539535|gb|CI179741.1|CI179741
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
EST: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTG GTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
genomic: TATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgct ... cttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTC
aagttagttaatttttgttttgttgagattatcaatatcgagctgcttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAG
agttaat putative branch site (score: 12)
ttaatttttgttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacatttgtgacaaacatttatattcacattttttttgcatagttaagttagttaatttttgttttgttgagattatcaatatcgagctgcttattacagGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG