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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagttatgtactacctatgttaccggtccaaaatattgatactattactgttgcagttattattagatccacatgaccatctttgtttcatattaacatgtaccctgttgtttagGTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCCATTACTTTCTCCAAACTCAAACTCGAGTATCCCTGCATATCAACCATCT

Basic information

species Oryza sativa
transcript LOC_Os10g37730.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29656060|gb|CB652335.1|CB652335
EST:     AAAAGGCCCTAGCAAGTTGACACTGAACTGTAATGG                         GTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACCCCGTTTCTTGGAGCC
genomic: AAAAGGCGCTAGCAAGTTGACACTGAACTGTAATGGgtaagagtta ... tgttgtttagGTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCC
EST: gi|29616394|gb|CB621406.1|CB621406
EST:     CTACTTCTGTCAAAAGGCGCTAGCAAGTTGACACTGAACTGTAATGG                         GTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCC
genomic: CTACTTCTGTCAAAAGGCGCTAGCAAGTTGACACTGAACTGTAATGGgtaagagtta ... tgttgtttagGTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCC
EST: gi|29616393|gb|CB621405.1|CB621405
EST:     CTACTTCTGTCAAAAGGCGCTAGCAAGTTGACACTGAACTGTAATGG                         GTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCC
genomic: CTACTTCTGTCAAAAGGCGCTAGCAAGTTGACACTGAACTGTAATGGgtaagagtta ... tgttgtttagGTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCC
EST: gi|66912678|gb|CX099526.1|CX099526
EST:     CTACTTCTGTCAAAAGGCGCTAGCAAGTTGACACTGAACTGTAATGG                         GTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCC
genomic: CTACTTCTGTCAAAAGGCGCTAGCAAGTTGACACTGAACTGTAATGGgtaagagtta ... tgttgtttagGTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattagatccacatgaccatctttgtttcatattaacatgtaccctgttgtttagGTGGCTTCCCATTGATGTTGCTAGGATGTTTGGACGCCGTTTCTTGGAGCCATTACTTTCTCCAAACTCAAACTCGAGTATCCCTGCATATCAACCATCT
                              tattaac  putative branch site (score: 1)
 ccctgtt  putative PPT
 tttgtttcatattaa  TA-rich tract